CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 22945350
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66485	Soybean	endoplasmic reticulum	95.97	95.97
CDY10545	Canola	cytosol	89.26	89.86
CDY71669	Canola	cytosol, plasma membrane	89.26	89.86
Bra027579.1-P	Field mustard	cytosol	88.59	89.19
Bra030844.1-P	Field mustard	cytosol	88.59	89.19
CDY13081	Canola	cytosol	88.59	89.19
CDY42375	Canola	cytosol	88.59	89.19
Zm00001d029968_P001	Maize	plastid	86.58	86.58
EER91919	Sorghum	cytosol	86.58	86.58
Solyc01g089970.2.1	Tomato	extracellular, plastid	85.91	86.49
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	85.91	85.91
PGSC0003DMT400080042	Potato	cytosol	85.23	85.81
CDY61716	Canola	cytosol	79.87	85.0
TraesCS1B01G230300.1	Wheat	cytosol, plastid	85.23	84.67
TraesCS1A01G217200.1	Wheat	golgi	84.56	84.0
TraesCS1D01G219000.1	Wheat	plastid	84.56	83.44
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	83.89	83.33
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	82.55	83.11
CDX93161	Canola	cytosol	34.9	82.54
GSMUA_Achr11P...	Banana	cytosol	78.52	82.39
GSMUA_Achr8P15010_001	Banana	cytosol	81.21	81.76
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	81.21	81.76
Os10t0563700-01	Rice	extracellular	79.87	78.81
Bra013108.1-P	Field mustard	cytosol	43.62	77.38
EER99399	Sorghum	cytosol	75.84	75.33
Solyc09g055420.1.1	Tomato	cytosol, unclear	58.39	74.36
Zm00001d021526_P001	Maize	cytosol, extracellular	74.5	72.55
Os07t0492000-01	Rice	extracellular	71.81	71.81
TraesCS4A01G213400.2	Wheat	unclear	72.48	55.96
TraesCS4B01G102400.2	Wheat	cytosol	71.81	55.44
TraesCS4D01G099200.2	Wheat	cytosol	71.14	54.92
KXG23408	Sorghum	plastid	26.17	49.37
KRH57193	Soybean	plastid	62.42	41.33
KRH03909	Soybean	plastid	62.42	40.97
KRH16591	Soybean	mitochondrion	52.35	40.0
KRH60038	Soybean	mitochondrion	59.73	37.87
KRH41307	Soybean	mitochondrion	59.73	37.71
KRH33600	Soybean	cytosol	18.79	35.9
KRG89746	Soybean	plastid	50.34	33.48
KRH47632	Soybean	cytosol	26.17	32.23
KRH06204	Soybean	endoplasmic reticulum, extracellular	34.23	23.83

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	EMBL:ACUP02004295
EnsemblPlantsGene:GLYMA_07G115900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006165
GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009117	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0046872
UniProt:I1KJI7	InterPro:IPR036850	EnsemblPlants:KRH48835	ProteinID:KRH48835	ProteinID:KRH48835.1	HAMAP:MF_00451
InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243
ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF66	MetaCyc:PWY-6545	MetaCyc:PWY-7176	MetaCyc:PWY-7184
MetaCyc:PWY-7187	MetaCyc:PWY-7197	MetaCyc:PWY-7198	MetaCyc:PWY-7205	MetaCyc:PWY-7210	MetaCyc:PWY-7220
MetaCyc:PWY-7221	MetaCyc:PWY-7222	MetaCyc:PWY-7224	MetaCyc:PWY-7226	MetaCyc:PWY-7227	SMART:SM00562
SUPFAM:SSF54919	UniParc:UPI0001CA9228	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:12595210..12597478

Molecular Weight (calculated)

16512.8 Da

IEP (calculated)

6.808

GRAVY (calculated)

-0.155

Length

149 amino acids

Sequence
(BLAST)

001: MAEQTFIMIK PDGVQRGLIG EIISRFERKG FYLKGLKLVT VDRPFAEKHY ADLSAKPFFS GLVDYIVSGP VVAMIWEGKN VVTTGRKIIG ATNPAQSEPG
101: TIRGDFAIDI GRNVIHGSDS VESANKEIAL WFPEGPANWQ SSQHSWIYE

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.