Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 5
- mitochondrion 2
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
extracellular:
21255809
extracellular: 25047395 plasma membrane: 27800704 plastid: 27992503 extracellular: 28232208 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
25047395
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
21255809
doi
National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EER99399 | Sorghum | cytosol | 94.63 | 94.0 |
Zm00001d021526_P001 | Maize | cytosol, extracellular | 93.96 | 91.5 |
GSMUA_Achr8P15010_001 | Banana | cytosol | 79.87 | 80.41 |
GSMUA_Achr5P18300_001 | Banana | cytosol, unclear | 77.85 | 78.38 |
GSMUA_Achr11P... | Banana | cytosol | 73.83 | 77.46 |
Os10t0563700-01 | Rice | extracellular | 77.18 | 76.16 |
Solyc01g089970.2.1 | Tomato | extracellular, plastid | 75.17 | 75.68 |
PGSC0003DMT400080042 | Potato | cytosol | 74.5 | 75.0 |
VIT_15s0021g01330.t01 | Wine grape | cytosol, extracellular | 72.48 | 72.97 |
KRH48835 | Soybean | endoplasmic reticulum, nucleus | 71.81 | 71.81 |
KRH66485 | Soybean | endoplasmic reticulum | 70.47 | 70.47 |
CDY13081 | Canola | cytosol | 69.8 | 70.27 |
Bra027579.1-P | Field mustard | cytosol | 69.8 | 70.27 |
AT4G09320.1 | Thale cress | cytosol, mitochondrion, nucleus | 69.8 | 69.8 |
CDY71669 | Canola | cytosol, plasma membrane | 69.13 | 69.59 |
CDY10545 | Canola | cytosol | 69.13 | 69.59 |
CDY42375 | Canola | cytosol | 68.46 | 68.92 |
Bra030844.1-P | Field mustard | cytosol | 68.46 | 68.92 |
TraesCS4B01G102400.2 | Wheat | cytosol | 88.59 | 68.39 |
TraesCS4D01G099200.2 | Wheat | cytosol | 87.92 | 67.88 |
TraesCS4A01G213400.2 | Wheat | unclear | 87.92 | 67.88 |
Solyc09g055420.1.1 | Tomato | cytosol, unclear | 53.02 | 67.52 |
CDX93161 | Canola | cytosol | 28.19 | 66.67 |
Bra013108.1-P | Field mustard | cytosol | 36.24 | 64.29 |
CDY61716 | Canola | cytosol | 59.06 | 62.86 |
Os12t0548300-01 | Rice | plastid | 67.79 | 45.91 |
VIT_19s0085g00080.t01 | Wine grape | cytosol, mitochondrion | 30.87 | 43.81 |
Os05t0595400-01 | Rice | plastid | 57.05 | 35.56 |
Os02t0565100-01 | Rice | endoplasmic reticulum | 31.54 | 25.97 |
Protein Annotations
KEGG:00230+2.7.4.6 | KEGG:00240+2.7.4.6 | KEGG:00983+2.7.4.6 | PDB:1PKU | Gene3D:3.30.70.141 | EntrezGene:4343275 |
MapMan:6.3.2.4 | EMBL:AY649743 | ProteinID:BAC83301.1 | ProteinID:BAD30551.1 | ProteinID:BAF21596.1 | ProteinID:BAT01561.1 |
EMBL:D16292 | ProteinID:EAZ39864.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004550 |
GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 |
GO:GO:0006165 | GO:GO:0006183 | GO:GO:0006228 | GO:GO:0006241 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009117 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 |
GO:GO:0046872 | InterPro:IPR036850 | HAMAP:MF_00451 | InterPro:NDK-like_dom | InterPro:NDK-like_dom_sf | InterPro:Nucleoside_diP_kinase |
InterPro:Nucleoside_diP_kinase_AS | EnsemblPlantsGene:Os07g0492000 | EnsemblPlants:Os07t0492000-01 | PFAM:PF00334 | PRINTS:PR01243 | ScanProsite:PS00469 |
PANTHER:PTHR11349 | PANTHER:PTHR11349:SF66 | UniProt:Q07661 | SMART:SM00562 | SUPFAM:SSF54919 | UniParc:UPI000012FE7E |
RefSeq:XP_015647142.1 | : | : | : | : | : |
Description
NUCLEOSIDE DIPHOSPHATE KINASE 1, Nucleoside diphosphate kinase 1Nucleoside diphosphate kinase, Cell elongation process in coleoptile (Os07t0492000-01)
Coordinates
chr7:-:18334997..18337480
Molecular Weight (calculated)
16862.3 Da
IEP (calculated)
6.809
GRAVY (calculated)
-0.216
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQSFIMIKP DGVQRGLIGD IISRFEKKGF YLRGMKFMNV ERSFAQQHYA DLSDKPFFPG LVEYIISGPV VAMVWEGKDV VATGRRIIGA TRPWEAAPGT
101: IRADYAVEVG RNVIHGSDSV DNGKKEIALW FPEGLAEWRS NLHPWIYES
101: IRADYAVEVG RNVIHGSDSV DNGKKEIALW FPEGLAEWRS NLHPWIYES
001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET
Arabidopsis Description
NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.