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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 1
  • cytosol 5
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 21255809
extracellular: 25047395
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21255809 doi
T Shinano, S Komatsu, T Yoshimura, S Tokutake, FJ Kong, T Watanabe, J Wasaki, M Osaki
National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER99399 Sorghum cytosol 94.63 94.0
Zm00001d021526_P001 Maize cytosol, extracellular 93.96 91.5
GSMUA_Achr8P15010_001 Banana cytosol 79.87 80.41
GSMUA_Achr5P18300_001 Banana cytosol, unclear 77.85 78.38
GSMUA_Achr11P... Banana cytosol 73.83 77.46
Os10t0563700-01 Rice extracellular 77.18 76.16
Solyc01g089970.2.1 Tomato extracellular, plastid 75.17 75.68
PGSC0003DMT400080042 Potato cytosol 74.5 75.0
VIT_15s0021g01330.t01 Wine grape cytosol, extracellular 72.48 72.97
KRH48835 Soybean endoplasmic reticulum, nucleus 71.81 71.81
KRH66485 Soybean endoplasmic reticulum 70.47 70.47
CDY13081 Canola cytosol 69.8 70.27
Bra027579.1-P Field mustard cytosol 69.8 70.27
AT4G09320.1 Thale cress cytosol, mitochondrion, nucleus 69.8 69.8
CDY71669 Canola cytosol, plasma membrane 69.13 69.59
CDY10545 Canola cytosol 69.13 69.59
CDY42375 Canola cytosol 68.46 68.92
Bra030844.1-P Field mustard cytosol 68.46 68.92
TraesCS4B01G102400.2 Wheat cytosol 88.59 68.39
TraesCS4D01G099200.2 Wheat cytosol 87.92 67.88
TraesCS4A01G213400.2 Wheat unclear 87.92 67.88
Solyc09g055420.1.1 Tomato cytosol, unclear 53.02 67.52
CDX93161 Canola cytosol 28.19 66.67
Bra013108.1-P Field mustard cytosol 36.24 64.29
CDY61716 Canola cytosol 59.06 62.86
Os12t0548300-01 Rice plastid 67.79 45.91
VIT_19s0085g00080.t01 Wine grape cytosol, mitochondrion 30.87 43.81
Os05t0595400-01 Rice plastid 57.05 35.56
Os02t0565100-01 Rice endoplasmic reticulum 31.54 25.97
Protein Annotations
KEGG:00230+2.7.4.6KEGG:00240+2.7.4.6KEGG:00983+2.7.4.6PDB:1PKUGene3D:3.30.70.141EntrezGene:4343275
MapMan:6.3.2.4EMBL:AY649743ProteinID:BAC83301.1ProteinID:BAD30551.1ProteinID:BAF21596.1ProteinID:BAT01561.1
EMBL:D16292ProteinID:EAZ39864.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004550
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139
GO:GO:0006165GO:GO:0006183GO:GO:0006228GO:GO:0006241GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009117GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016740
GO:GO:0046872InterPro:IPR036850HAMAP:MF_00451InterPro:NDK-like_domInterPro:NDK-like_dom_sfInterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_ASEnsemblPlantsGene:Os07g0492000EnsemblPlants:Os07t0492000-01PFAM:PF00334PRINTS:PR01243ScanProsite:PS00469
PANTHER:PTHR11349PANTHER:PTHR11349:SF66UniProt:Q07661SMART:SM00562SUPFAM:SSF54919UniParc:UPI000012FE7E
RefSeq:XP_015647142.1:::::
Description
NUCLEOSIDE DIPHOSPHATE KINASE 1, Nucleoside diphosphate kinase 1Nucleoside diphosphate kinase, Cell elongation process in coleoptile (Os07t0492000-01)
Coordinates
chr7:-:18334997..18337480
Molecular Weight (calculated)
16862.3 Da
IEP (calculated)
6.809
GRAVY (calculated)
-0.216
Length
149 amino acids
Sequence
(BLAST)
001: MEQSFIMIKP DGVQRGLIGD IISRFEKKGF YLRGMKFMNV ERSFAQQHYA DLSDKPFFPG LVEYIISGPV VAMVWEGKDV VATGRRIIGA TRPWEAAPGT
101: IRADYAVEVG RNVIHGSDSV DNGKKEIALW FPEGLAEWRS NLHPWIYES
Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)
001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET
Arabidopsis Description
NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.