Factsheet for TraesCS4A01G213400.2

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G099200.2	Wheat	cytosol	95.85	95.85
TraesCS4B01G102400.2	Wheat	cytosol	94.82	94.82
EER99399	Sorghum	cytosol	69.95	90.0
Zm00001d021526_P001	Maize	cytosol, extracellular	70.98	89.54
Os07t0492000-01	Rice	extracellular	67.88	87.92
GSMUA_Achr8P15010_001	Banana	cytosol	60.1	78.38
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	59.07	77.03
GSMUA_Achr11P...	Banana	cytosol	55.44	75.35
TraesCS1A01G217200.1	Wheat	golgi	58.03	74.67
Solyc01g089970.2.1	Tomato	extracellular, plastid	56.99	74.32
PGSC0003DMT400080042	Potato	cytosol	56.48	73.65
KRH48835	Soybean	endoplasmic reticulum, nucleus	55.96	72.48
CDY71669	Canola	cytosol, plasma membrane	55.44	72.3
CDY13081	Canola	cytosol	55.44	72.3
Bra027579.1-P	Field mustard	cytosol	55.44	72.3
CDY10545	Canola	cytosol	54.92	71.62
KRH66485	Soybean	endoplasmic reticulum	54.92	71.14
CDY42375	Canola	cytosol	54.4	70.95
Bra030844.1-P	Field mustard	cytosol	54.4	70.95
CDX93161	Canola	cytosol	22.8	69.84
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	53.89	69.8
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	53.37	69.59
Solyc09g055420.1.1	Tomato	cytosol, unclear	40.93	67.52
Bra013108.1-P	Field mustard	cytosol	28.5	65.48
CDY61716	Canola	cytosol	47.15	65.0
TraesCS5A01G092400.1	Wheat	plastid	48.7	42.53
VIT_19s0085g00080.t01	Wine grape	cytosol, mitochondrion	21.76	40.0
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	45.08	36.1
TraesCS7A01G380500.1	Wheat	endoplasmic reticulum	23.83	25.56

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0003674
GO:GO:0003824	GO:GO:0004550	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	InterPro:IPR036850	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS
PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF66	SMART:SM00562
SUPFAM:SSF54919	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G213400	EnsemblPlants:TraesCS4A01G213400.2	TIGR:cd04413	:

Description

No Description!

Coordinates

chr4A:-:511230595..511232468

Molecular Weight (calculated)

21579.3 Da

IEP (calculated)

8.666

GRAVY (calculated)

0.039

Length

193 amino acids

Sequence
(BLAST)

001: MEQTFIMIKP DGVQRGLVNP NPRLCKEQPL RACLYLAIGF VSGLLEPSLI IGFVFAISLL QIGDIISRFE KKGYYLKGMK FMNVDKSFAQ QHYADLSAQP
101: FFAKLVDYII SGPVVAMVWE GKDVVLTGRR IIGATRPWEA APGTIRGDHA VEVSRNVIHG SDSVENGKKE IALWFPGGLA EWKSNLHPWI YEN

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.