Factsheet for VIT_15s0021g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 6
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080042	Potato	cytosol	84.46	84.46
Solyc01g089970.2.1	Tomato	extracellular, plastid	83.78	83.78
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	83.78	83.22
CDY71669	Canola	cytosol, plasma membrane	83.11	83.11
CDY13081	Canola	cytosol	82.43	82.43
Bra027579.1-P	Field mustard	cytosol	82.43	82.43
GSMUA_Achr11P...	Banana	cytosol	79.05	82.39
Bra030844.1-P	Field mustard	cytosol	81.76	81.76
CDY42375	Canola	cytosol	81.76	81.76
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	81.76	81.76
EER91919	Sorghum	cytosol	81.76	81.21
Zm00001d029968_P001	Maize	plastid	81.76	81.21
KRH48835	Soybean	endoplasmic reticulum, nucleus	81.76	81.21
CDY10545	Canola	cytosol	81.08	81.08
CDX93161	Canola	cytosol	34.46	80.95
GSMUA_Achr8P15010_001	Banana	cytosol	80.41	80.41
TraesCS1B01G230300.1	Wheat	cytosol, plastid	81.08	80.0
TraesCS1A01G217200.1	Wheat	golgi	81.08	80.0
KRH66485	Soybean	endoplasmic reticulum	80.41	79.87
TraesCS1D01G219000.1	Wheat	plastid	81.08	79.47
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	79.73	78.67
CDY61716	Canola	cytosol	72.97	77.14
Bra013108.1-P	Field mustard	cytosol	43.24	76.19
Os10t0563700-01	Rice	extracellular	77.7	76.16
EER99399	Sorghum	cytosol	74.32	73.33
Zm00001d021526_P001	Maize	cytosol, extracellular	75.0	72.55
Os07t0492000-01	Rice	extracellular	72.97	72.48
Solyc09g055420.1.1	Tomato	cytosol, unclear	56.76	71.79
VIT_19s0085g00080.t01	Wine grape	cytosol, mitochondrion	43.92	61.9
TraesCS4B01G102400.2	Wheat	cytosol	70.27	53.89
TraesCS4A01G213400.2	Wheat	unclear	69.59	53.37
TraesCS4D01G099200.2	Wheat	cytosol	69.59	53.37
KXG23408	Sorghum	plastid	25.68	48.1
VIT_17s0000g10280.t01	Wine grape	plastid	59.46	38.26
VIT_02s0025g01500.t01	Wine grape	plastid	58.11	36.6
VIT_09s0002g00950.t01	Wine grape	cytosol	33.78	34.97

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	EntrezGene:100258184	wikigene:100258184	Gene3D:3.30.70.141
MapMan:6.3.2.4	UniProt:A5B878	ProteinID:AAP35041	ProteinID:AAP35041.1	EMBL:AM450092	EMBL:AY194364
ProteinID:CAN74274	ProteinID:CAN74274.1	ProteinID:CCB43900	ProteinID:CCB43900.1	EMBL:FN594952	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	InterPro:IPR036850	EntrezGene:LOC100258184	wikigene:LOC100258184	HAMAP:MF_00451
InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243
ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF66	SMART:SM00562	SUPFAM:SSF54919	TIGR:TC54163
TIGR:TC59509	TIGR:TC60940	TIGR:TC64035	UniParc:UPI000152084D	ArrayExpress:VIT_15s0021g01330	EnsemblPlantsGene:VIT_15s0021g01330
EnsemblPlants:VIT_15s0021g01330.t01	unigene:Vvi.25304	unigene:Vvi.6748	RefSeq:XP_002271352	RefSeq:XP_002271352.1	SEG:seg

Description

Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A5B878]

Coordinates

chr15:+:11581021..11582652

Molecular Weight (calculated)

16310.6 Da

IEP (calculated)

7.776

GRAVY (calculated)

-0.114

Length

148 amino acids

Sequence
(BLAST)

001: MEQTFIMIKP DGVQRNLVGE IIGRFEKKGF SLKGLKLLSV ERGFAEKHYE DLSSKPFFNG LVEYIISGPV VAMIWEGKNV VTTGRKIIGA TNPSDSAPGT
101: IRGDFAVDIG RNVIHGSDSV GSARKEIALW FPEGPVAWSS SLNHWIYE

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.