Factsheet for HORVU1Hr1G055440.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G217200.1	Wheat	golgi	97.33	97.33
TraesCS1B01G230300.1	Wheat	cytosol, plastid	97.33	97.33
TraesCS1D01G219000.1	Wheat	plastid	96.67	96.03
Os10t0563700-01	Rice	extracellular	90.0	89.4
EER91919	Sorghum	cytosol	86.67	87.25
Zm00001d029968_P001	Maize	plastid	85.33	85.91
KRH48835	Soybean	endoplasmic reticulum, nucleus	83.33	83.89
Solyc01g089970.2.1	Tomato	extracellular, plastid	82.67	83.78
PGSC0003DMT400080042	Potato	cytosol	82.0	83.11
GSMUA_Achr11P...	Banana	cytosol	78.0	82.39
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	81.33	81.88
KRH66485	Soybean	endoplasmic reticulum	80.67	81.21
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	79.33	80.41
GSMUA_Achr8P15010_001	Banana	cytosol	78.67	79.73
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	78.67	79.73
CDY71669	Canola	cytosol, plasma membrane	76.67	77.7
CDY13081	Canola	cytosol	76.0	77.03
CDY10545	Canola	cytosol	76.0	77.03
Bra027579.1-P	Field mustard	cytosol	76.0	77.03
CDY42375	Canola	cytosol	75.33	76.35
Bra030844.1-P	Field mustard	cytosol	75.33	76.35
Solyc09g055420.1.1	Tomato	cytosol, unclear	58.0	74.36
CDY61716	Canola	cytosol	67.33	72.14
CDX93161	Canola	cytosol	28.67	68.25
Bra013108.1-P	Field mustard	cytosol	37.33	66.67
VIT_19s0085g00080.t01	Wine grape	cytosol, mitochondrion	34.0	48.57
HORVU5Hr1G024250.1	Barley	mitochondrion	66.67	40.32
HORVU1Hr1G095400.2	Barley	plastid	59.33	35.89
HORVU7Hr1G090780.4	Barley	endoplasmic reticulum	18.0	27.0
HORVU7Hr1G090750.2	Barley	endoplasmic reticulum, extracellular	22.0	23.4

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	EMBL:AK356457
UniProt:F2CXV3	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0070301	EnsemblPlantsGene:HORVU1Hr1G055440	EnsemblPlants:HORVU1Hr1G055440.1	InterPro:IPR036850
HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334
PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF66	SMART:SM00562	SUPFAM:SSF54919
UniParc:UPI0002004B32	:	:	:	:	:

Description

Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:F2CXV3]

Coordinates

chrchr1H:-:406338102..406342417

Molecular Weight (calculated)

16647.0 Da

IEP (calculated)

6.810

GRAVY (calculated)

-0.145

Length

150 amino acids

Sequence
(BLAST)

001: MAEQTFIMIK PDGVQRGLIG EVISRFEKKG FYLKGMKLQN VEKSFAEQHY ADLSSKPFFA GLVEYIVSGP VVAMVWEGKS VVATGRKIIG ATNPLASEPG
101: TIRGDFAVDI GRNVIHGSDS VENARKEIAL WFPEGLAEWR SSQHNWIYEA

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.