Factsheet for Solyc01g089970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 20496099
extracellular: 22364583
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080042	Potato	cytosol	99.32	99.32
KRH48835	Soybean	endoplasmic reticulum, nucleus	86.49	85.91
GSMUA_Achr11P...	Banana	cytosol	81.76	85.21
CDY71669	Canola	cytosol, plasma membrane	85.14	85.14
KRH66485	Soybean	endoplasmic reticulum	85.14	84.56
Bra027579.1-P	Field mustard	cytosol	84.46	84.46
CDY13081	Canola	cytosol	84.46	84.46
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	84.46	84.46
GSMUA_Achr8P15010_001	Banana	cytosol	84.46	84.46
CDX93161	Canola	cytosol	35.81	84.13
TraesCS1A01G217200.1	Wheat	golgi	85.14	84.0
TraesCS1B01G230300.1	Wheat	cytosol, plastid	85.14	84.0
Bra030844.1-P	Field mustard	cytosol	83.78	83.78
CDY42375	Canola	cytosol	83.78	83.78
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	83.78	83.78
Solyc09g055420.1.1	Tomato	cytosol, unclear	66.22	83.76
TraesCS1D01G219000.1	Wheat	plastid	85.14	83.44
CDY10545	Canola	cytosol	83.11	83.11
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	83.78	82.67
EER91919	Sorghum	cytosol	83.11	82.55
Zm00001d029968_P001	Maize	plastid	82.43	81.88
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	81.76	81.21
Os10t0563700-01	Rice	extracellular	81.08	79.47
CDY61716	Canola	cytosol	74.32	78.57
EER99399	Sorghum	cytosol	77.03	76.0
Os07t0492000-01	Rice	extracellular	75.68	75.17
Bra013108.1-P	Field mustard	cytosol	42.57	75.0
Zm00001d021526_P001	Maize	cytosol, extracellular	77.03	74.51
TraesCS4A01G213400.2	Wheat	unclear	74.32	56.99
TraesCS4B01G102400.2	Wheat	cytosol	73.65	56.48
TraesCS4D01G099200.2	Wheat	cytosol	72.97	55.96
Solyc06g075470.1.1	Tomato	cytosol	28.38	53.16
KXG23408	Sorghum	plastid	25.0	46.84
Solyc06g071960.2.1	Tomato	plastid	62.84	41.52
Solyc03g110960.2.1	Tomato	plastid	62.84	39.91
Solyc08g008340.2.1	Tomato	plastid	58.78	37.18
Solyc08g082430.2.1	Tomato	plastid	58.11	36.13
Solyc12g049370.1.1	Tomato	endoplasmic reticulum	32.43	27.91

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009117	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0046872	InterPro:IPR036850	UniProt:K4AYT8
HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334
PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF66	SMART:SM00562	SUPFAM:SSF54919
EnsemblPlantsGene:Solyc01g089970.2	EnsemblPlants:Solyc01g089970.2.1	UniParc:UPI0002761B65	:	:	:

Description

Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:K4AYT8]

Coordinates

chr1:+:83688122..83689633

Molecular Weight (calculated)

16252.6 Da

IEP (calculated)

6.809

GRAVY (calculated)

0.053

Length

148 amino acids

Sequence
(BLAST)

001: MEQTFIMIKP DGVQRGLVGE IISRFEKKGF SLKGLKLITV DRAFAEKHYA DLSAKPFFNG LVEYIVSGPV VAMVWEGKGV VATGRKIIGA TNPLESAAGT
101: IRGDFAIDIG RNVIHGSDAV ESARKEIALW FPEGIAEWQS SLHSWIYE

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.