Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 3
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:secretory
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013108.1-P Field mustard cytosol 34.18 32.14
CDX93161 Canola cytosol 22.78 28.57
CDY61716 Canola cytosol 49.37 27.86
GSMUA_Achr11P... Banana cytosol 49.37 27.46
Solyc09g055420.1.1 Tomato cytosol, unclear 40.51 27.35
Bra027579.1-P Field mustard cytosol 50.63 27.03
Bra030844.1-P Field mustard cytosol 50.63 27.03
CDY13081 Canola cytosol 50.63 27.03
CDY42375 Canola cytosol 50.63 27.03
CDY71669 Canola cytosol, plasma membrane 50.63 27.03
EER91919 Sorghum cytosol 50.63 26.85
CDY10545 Canola cytosol 49.37 26.35
GSMUA_Achr8P15010_001 Banana cytosol 49.37 26.35
KRH66485 Soybean endoplasmic reticulum 49.37 26.17
KRH48835 Soybean endoplasmic reticulum, nucleus 49.37 26.17
VIT_19s0085g00080.t01 Wine grape cytosol, mitochondrion 34.18 25.71
VIT_15s0021g01330.t01 Wine grape cytosol, extracellular 48.1 25.68
EER99399 Sorghum cytosol 48.1 25.33
GSMUA_Achr5P18300_001 Banana cytosol, unclear 46.84 25.0
PGSC0003DMT400080042 Potato cytosol 46.84 25.0
Solyc01g089970.2.1 Tomato extracellular, plastid 46.84 25.0
AT4G09320.1 Thale cress cytosol, mitochondrion, nucleus 45.57 24.16
EES16135 Sorghum plastid 45.57 16.22
KXG22725 Sorghum mitochondrion 44.3 14.4
KXG30465 Sorghum plastid 31.65 10.5
Protein Annotations
KEGG:00230+2.7.4.6KEGG:00240+2.7.4.6KEGG:00983+2.7.4.6Gene3D:3.30.70.141MapMan:50.2.7UniProt:A0A1B6PCM4
GO:GO:0003674GO:GO:0003824GO:GO:0004550GO:GO:0006139GO:GO:0006165GO:GO:0006183
GO:GO:0006228GO:GO:0006241GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016301GO:GO:0016740InterPro:IPR036850EnsemblPlants:KXG23408ProteinID:KXG23408ProteinID:KXG23408.1
InterPro:NDK-like_domInterPro:NDK-like_dom_sfInterPro:Nucleoside_diP_kinasePFAM:PF00334PRINTS:PR01243PANTHER:PTHR11349
PANTHER:PTHR11349:SF66MetaCyc:PWY-6545MetaCyc:PWY-7176MetaCyc:PWY-7184MetaCyc:PWY-7187MetaCyc:PWY-7197
MetaCyc:PWY-7198MetaCyc:PWY-7205MetaCyc:PWY-7210MetaCyc:PWY-7220MetaCyc:PWY-7221MetaCyc:PWY-7222
MetaCyc:PWY-7224MetaCyc:PWY-7226MetaCyc:PWY-7227EnsemblPlantsGene:SORBI_3008G091400SUPFAM:SSF54919UniParc:UPI00081ACD96
Description
hypothetical protein
Coordinates
chr8:+:37962849..37976415
Molecular Weight (calculated)
8288.2 Da
IEP (calculated)
7.358
GRAVY (calculated)
0.701
Length
79 amino acids
Sequence
(BLAST)
1: MGLAAAARCS TLVGTSLATP PRELVVASHI LAMDLSFKPF FSDLVDYIIS GAVVAMVWED MSVISTGRKI IGATKSPGF
Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)
001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET
Arabidopsis Description
NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.