CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48835	Soybean	endoplasmic reticulum, nucleus	95.97	95.97
CDY71669	Canola	cytosol, plasma membrane	87.92	88.51
Bra027579.1-P	Field mustard	cytosol	87.25	87.84
CDY10545	Canola	cytosol	87.25	87.84
CDY13081	Canola	cytosol	87.25	87.84
Bra030844.1-P	Field mustard	cytosol	86.58	87.16
CDY42375	Canola	cytosol	86.58	87.16
Zm00001d029968_P001	Maize	plastid	86.58	86.58
EER91919	Sorghum	cytosol	86.58	86.58
Solyc01g089970.2.1	Tomato	extracellular, plastid	84.56	85.14
PGSC0003DMT400080042	Potato	cytosol	83.89	84.46
CDX93161	Canola	cytosol	35.57	84.13
CDY61716	Canola	cytosol	78.52	83.57
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	83.22	83.22
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	82.55	83.11
GSMUA_Achr11P...	Banana	cytosol	78.52	82.39
TraesCS1B01G230300.1	Wheat	cytosol, plastid	82.55	82.0
GSMUA_Achr8P15010_001	Banana	cytosol	81.21	81.76
TraesCS1A01G217200.1	Wheat	golgi	81.88	81.33
TraesCS1D01G219000.1	Wheat	plastid	81.88	80.79
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	81.21	80.67
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	79.87	80.41
Bra013108.1-P	Field mustard	cytosol	44.3	78.57
Os10t0563700-01	Rice	extracellular	77.18	76.16
EER99399	Sorghum	cytosol	74.5	74.0
Solyc09g055420.1.1	Tomato	cytosol, unclear	56.38	71.79
Zm00001d021526_P001	Maize	cytosol, extracellular	73.15	71.24
Os07t0492000-01	Rice	extracellular	70.47	70.47
TraesCS4A01G213400.2	Wheat	unclear	71.14	54.92
TraesCS4B01G102400.2	Wheat	cytosol	70.47	54.4
TraesCS4D01G099200.2	Wheat	cytosol	69.8	53.89
KXG23408	Sorghum	plastid	26.17	49.37
KRH16591	Soybean	mitochondrion	53.02	40.51
KRH57193	Soybean	plastid	61.07	40.44
KRH03909	Soybean	plastid	61.07	40.09
KRH60038	Soybean	mitochondrion	57.72	36.6
KRH41307	Soybean	mitochondrion	57.72	36.44
KRH33600	Soybean	cytosol	18.12	34.62
KRG89746	Soybean	plastid	51.01	33.93
KRH47632	Soybean	cytosol	24.83	30.58
KRH06204	Soybean	endoplasmic reticulum, extracellular	32.89	22.9

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	EMBL:ACUP02001972
EnsemblPlantsGene:GLYMA_03G109500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006165
GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	UniProt:I1JMQ0	InterPro:IPR036850
EnsemblPlants:KRH66485	ProteinID:KRH66485	ProteinID:KRH66485.1	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf
InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349
PANTHER:PTHR11349:SF66	MetaCyc:PWY-6545	MetaCyc:PWY-7176	MetaCyc:PWY-7184	MetaCyc:PWY-7187	MetaCyc:PWY-7197
MetaCyc:PWY-7198	MetaCyc:PWY-7205	MetaCyc:PWY-7210	MetaCyc:PWY-7220	MetaCyc:PWY-7221	MetaCyc:PWY-7222
MetaCyc:PWY-7224	MetaCyc:PWY-7226	MetaCyc:PWY-7227	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI00023C1A67

Description

hypothetical protein

Coordinates

chr3:-:31164023..31166187

Molecular Weight (calculated)

16319.6 Da

IEP (calculated)

6.808

GRAVY (calculated)

-0.117

Length

149 amino acids

Sequence
(BLAST)

001: MAEQTFIMIK PDGVQRGLIG EIISRFEKKG FYLKGLKLVT VDRPFAEKHY ADLSAKPFFS GLVDYIISGP VVAMIWEGKN VVTTGRKIIG ATNPAQSEPG
101: TIRGDFAIDI GRNVIHGSDA IESANKEIAL GVPEGPANWQ SSQHSWIYE

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.