CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075470.1.1	Tomato	cytosol	31.36	93.67
KRH60038	Soybean	mitochondrion	93.22	93.62
TraesCS1D01G452300.1	Wheat	cytosol	59.32	86.42
Bra033163.1-P	Field mustard	plastid	80.51	80.85
CDY25267	Canola	plastid	80.51	80.85
CDX94238	Canola	plastid	80.08	80.43
AT4G23900.1	Thale cress	mitochondrion	80.08	79.75
AT4G11010.1	Thale cress	mitochondrion, plastid	80.08	79.41
CDX86826	Canola	mitochondrion	78.81	78.81
Bra035260.1-P	Field mustard	mitochondrion	78.81	78.81
PGSC0003DMT400031997	Potato	extracellular	78.81	78.15
Solyc08g082430.2.1	Tomato	plastid	78.81	78.15
Solyc08g008340.2.1	Tomato	plastid	77.12	77.78
PGSC0003DMT400014828	Potato	mitochondrion	75.85	77.16
CDY47613	Canola	mitochondrion	76.27	75.95
VIT_02s0025g01500.t01	Wine grape	plastid	75.42	75.74
Bra013742.1-P	Field mustard	mitochondrion	75.85	75.53
CDY03508	Canola	mitochondrion, plastid	75.0	74.68
GSMUA_Achr1P11560_001	Banana	mitochondrion	69.92	69.62
GSMUA_Achr4P01100_001	Banana	mitochondrion	69.92	69.33
Os05t0595400-01	Rice	plastid	68.64	67.78
Zm00001d009774_P001	Maize	mitochondrion	68.22	67.65
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	69.07	67.63
Zm00001d039221_P001	Maize	mitochondrion	66.53	66.24
KXG22725	Sorghum	mitochondrion	67.8	65.84
TraesCS1B01G478800.1	Wheat	plastid	68.64	65.32
HORVU1Hr1G095400.2	Barley	plastid	68.64	65.32
Zm00001d004713_P001	Maize	endoplasmic reticulum	50.0	61.78
KRH48835	Soybean	endoplasmic reticulum, nucleus	37.71	59.73
KRH66485	Soybean	endoplasmic reticulum	36.44	57.72
Zm00001d024444_P001	Maize	plastid	53.81	43.94
KRH57193	Soybean	plastid	40.25	42.22
KRH16591	Soybean	mitochondrion	34.75	42.05
KRH03909	Soybean	plastid	40.25	41.85
AT4G23895.3	Thale cress	cytosol	79.66	40.26
KRG89746	Soybean	plastid	34.75	36.61
KRH33600	Soybean	cytosol	11.86	35.9
KRH47632	Soybean	cytosol	16.53	32.23
CDY40857	Canola	endoplasmic reticulum, golgi	40.25	28.36
KRH06204	Soybean	endoplasmic reticulum, extracellular	19.92	21.96

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	EMBL:ACUP02004759
EnsemblPlantsGene:GLYMA_08G022500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006165
GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	UniProt:I1KPJ5	InterPro:IPR036850
EnsemblPlants:KRH41307	ProteinID:KRH41307	ProteinID:KRH41307.1	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf
InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349
PANTHER:PTHR11349:SF91	MetaCyc:PWY-6545	MetaCyc:PWY-7176	MetaCyc:PWY-7184	MetaCyc:PWY-7187	MetaCyc:PWY-7197
MetaCyc:PWY-7198	MetaCyc:PWY-7205	MetaCyc:PWY-7210	MetaCyc:PWY-7220	MetaCyc:PWY-7221	MetaCyc:PWY-7222
MetaCyc:PWY-7224	MetaCyc:PWY-7226	MetaCyc:PWY-7227	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI0001CA9FAF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:1810601..1813379

Molecular Weight (calculated)

25471.4 Da

IEP (calculated)

9.748

GRAVY (calculated)

-0.171

Length

236 amino acids

Sequence
(BLAST)

001: MASQVCKSAS RAARSLLSSR FHSQGRALGA AAAVSLSSKV PLFYGKNGSG NGSASSSSSS SWISGALALP AAAYMFQDQE VQAAELERTF IAIKPDGVQR
101: GLISEIISRF ERKGYKLVGI KVVIPKKEFA QRHYHDLKER PFFDGLCDFL SSGPVIAMVW EGQGVISYGR KLIGATDPQK SEPGTIRGDL AVVVGRNIIH
201: GSDGPETAKD EIKLWFKPEE LVSFTSNAEK WIYGAN

Best Arabidopsis Sequence Match ( AT4G23900.1 )
(BLAST)

001: MSSQICRSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG RKLIGATDPQ KSEPGTIRGD LAVVVGRNII
201: HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN

Arabidopsis Description

NDK4Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LAH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.