CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47613	Canola	mitochondrion	95.36	95.36
Solyc06g075470.1.1	Tomato	cytosol	30.38	91.14
AT4G23900.1	Thale cress	mitochondrion	88.61	88.61
CDX94238	Canola	plastid	86.08	86.81
CDY25267	Canola	plastid	86.08	86.81
TraesCS1D01G452300.1	Wheat	cytosol	58.23	85.19
CDX86826	Canola	mitochondrion	83.97	84.32
PGSC0003DMT400014828	Potato	mitochondrion	75.53	77.16
Solyc08g008340.2.1	Tomato	plastid	75.53	76.5
VIT_02s0025g01500.t01	Wine grape	plastid	75.11	75.74
KRH60038	Soybean	mitochondrion	74.68	75.32
Solyc08g082430.2.1	Tomato	plastid	75.53	75.21
PGSC0003DMT400031997	Potato	extracellular	75.53	75.21
KRH41307	Soybean	mitochondrion	74.68	75.0
GSMUA_Achr1P11560_001	Banana	mitochondrion	67.93	67.93
GSMUA_Achr4P01100_001	Banana	mitochondrion	67.93	67.65
Os05t0595400-01	Rice	plastid	67.93	67.36
Zm00001d039221_P001	Maize	mitochondrion	67.09	67.09
Zm00001d009774_P001	Maize	mitochondrion	67.09	66.81
KXG22725	Sorghum	mitochondrion	67.93	66.26
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	66.67	65.56
TraesCS1B01G478800.1	Wheat	plastid	67.09	64.11
HORVU1Hr1G095400.2	Barley	plastid	66.67	63.71
Zm00001d004713_P001	Maize	endoplasmic reticulum	48.95	60.73
CDY10545	Canola	cytosol	36.29	58.11
CDY42375	Canola	cytosol	35.87	57.43
CDX93161	Canola	cytosol	15.19	57.14
CDY13081	Canola	cytosol	35.44	56.76
CDY71669	Canola	cytosol, plasma membrane	35.44	56.76
CDY61716	Canola	cytosol	29.96	50.71
AT4G23895.3	Thale cress	cytosol	87.76	44.54
Zm00001d024444_P001	Maize	plastid	51.48	42.21
CDY41513	Canola	plastid	38.4	39.22
CDX84395	Canola	plastid	38.4	39.22
CDY48138	Canola	plastid	37.13	38.26
CDX96770	Canola	endoplasmic reticulum	22.78	30.51
CDY66964	Canola	endoplasmic reticulum	22.36	30.11
CDY40857	Canola	endoplasmic reticulum, golgi	40.51	28.66

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:A0A078EVA5
EnsemblPlants:CDY03508	ProteinID:CDY03508	ProteinID:CDY03508.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550
GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00116190001
InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS
PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF91	MetaCyc:PWY-6545
MetaCyc:PWY-7176	MetaCyc:PWY-7184	MetaCyc:PWY-7187	MetaCyc:PWY-7197	MetaCyc:PWY-7198	MetaCyc:PWY-7205
MetaCyc:PWY-7210	MetaCyc:PWY-7220	MetaCyc:PWY-7221	MetaCyc:PWY-7222	MetaCyc:PWY-7224	MetaCyc:PWY-7226
MetaCyc:PWY-7227	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI0004EB152F	SEG:seg	:

Description

BnaC01g15740D

Coordinates

chrLK031943:-:950912..953577

Molecular Weight (calculated)

26007.2 Da

IEP (calculated)

9.913

GRAVY (calculated)

-0.203

Length

237 amino acids

Sequence
(BLAST)

001: MSSQICRSAT RAARSLLSSS KNTHFFSEGR AIGAATLVYA SGKVPQYASN FRQSGSTFAS KSWITGLLAL PTAAFMLQDQ EVHAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGFKLVG LKIMVPSKGF AQQHYHGAKE RPFFNGLCDF ISSGPVVAMV WEGEGVIRYG RKLIGATDPK KSEPGTIRGD LAVVVARNII
201: HGSDGPETAK DEISLWFKPE ELVSYTNNAE KWIYGQN

Best Arabidopsis Sequence Match ( AT4G23900.1 )
(BLAST)

001: MSSQICRSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG RKLIGATDPQ KSEPGTIRGD LAVVVGRNII
201: HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN

Arabidopsis Description

NDK4Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LAH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.