Factsheet for GSMUA_Achr4P01100_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075470.1.1	Tomato	cytosol	30.67	92.41
GSMUA_Achr1P11560_001	Banana	mitochondrion	88.66	89.03
TraesCS1D01G452300.1	Wheat	cytosol	60.5	88.89
VIT_02s0025g01500.t01	Wine grape	plastid	76.47	77.45
PGSC0003DMT400014828	Potato	mitochondrion	72.69	74.57
Solyc08g008340.2.1	Tomato	plastid	73.11	74.36
PGSC0003DMT400031997	Potato	extracellular	73.11	73.11
Solyc08g082430.2.1	Tomato	plastid	72.69	72.69
CDX94238	Canola	plastid	70.17	71.06
KRH60038	Soybean	mitochondrion	70.17	71.06
Bra033163.1-P	Field mustard	plastid	70.17	71.06
CDY25267	Canola	plastid	70.17	71.06
Zm00001d009774_P001	Maize	mitochondrion	71.01	71.01
AT4G23900.1	Thale cress	mitochondrion	70.17	70.46
KXG22725	Sorghum	mitochondrion	71.85	70.37
Os05t0595400-01	Rice	plastid	70.59	70.29
Zm00001d039221_P001	Maize	mitochondrion	69.75	70.04
Bra035260.1-P	Field mustard	mitochondrion	69.33	69.92
CDX86826	Canola	mitochondrion	69.33	69.92
KRH41307	Soybean	mitochondrion	69.33	69.92
AT4G11010.1	Thale cress	mitochondrion, plastid	68.91	68.91
CDY47613	Canola	mitochondrion	68.49	68.78
Bra013742.1-P	Field mustard	mitochondrion	68.49	68.78
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	68.91	68.05
CDY03508	Canola	mitochondrion, plastid	67.65	67.93
TraesCS1B01G478800.1	Wheat	plastid	70.59	67.74
HORVU1Hr1G095400.2	Barley	plastid	69.75	66.94
Zm00001d004713_P001	Maize	endoplasmic reticulum	53.36	66.49
GSMUA_Achr8P15010_001	Banana	cytosol	36.97	59.46
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	36.97	59.46
GSMUA_Achr11P...	Banana	cytosol	34.87	58.45
Zm00001d024444_P001	Maize	plastid	55.88	46.02
GSMUA_AchrUn_...	Banana	plastid	37.82	38.46
AT4G23895.3	Thale cress	cytosol	69.75	35.55
GSMUA_Achr3P05930_001	Banana	endoplasmic reticulum	21.85	30.06
CDY40857	Canola	endoplasmic reticulum, golgi	38.24	27.16

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr4G01100_001
EnsemblPlants:GSMUA_Achr4P01100_001	EnsemblPlants:GSMUA_Achr4T01100_001	InterPro:IPR036850	UniProt:M0SK27	HAMAP:MF_00451	InterPro:NDK-like_dom
InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469
PANTHER:PTHR11349	PANTHER:PTHR11349:SF91	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI000296ED08	SEG:seg

Description

Nucleoside diphosphate kinase 4, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G01100_001]

Coordinates

chr4:-:894818..899360

Molecular Weight (calculated)

26367.5 Da

IEP (calculated)

9.574

GRAVY (calculated)

-0.170

Length

238 amino acids

Sequence
(BLAST)

001: MSTQVFRSAS RTARAFLSAS RTAPLHCQWR TAAAATATVF RGSARSLSSY CEKADCKNTT SRGWLYGTLA FPAAVYLLQD HQLHAAELER TFIAIKPDGV
101: QRGLIAEIVS RFERKGFKLV AIKIVVPSKE FAQKHYHDLK ERPFFNGLCD FLSSGPVVAM VWEGEGVIKY GRKLIGATDP QKSEPGTIRG DLAVAVGRNI
201: IHGSDGPETA KDEIALWFRP IELVSYTSNA EKWIYEVN

Best Arabidopsis Sequence Match ( AT4G11010.1 )
(BLAST)

001: MSSQICRSAS KAAKSLLSSA KNARFFSEGR AIGAAAAVSA SGKIPLYASN FARSSGSGVA SKSWITGLLA LPAAAYMIQD QEVLAAEMER TFIAIKPDGV
101: QRGLISEIIS RFERKGFKLV GIKVIVPSKD FAQKHYHDLK ERPFFNGLCD FLSSGPVIAM VWEGDGVIRY GRKLIGATDP QKSEPGTIRG DLAVTVGRNI
201: IHGSDGPETA KDEISLWFKP QELVSYTSNS EKWLYGDN

Arabidopsis Description

NDPK3Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UTZ0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.