Factsheet for PGSC0003DMT400014828

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075470.1.1	Tomato	cytosol	32.76	96.2
Solyc08g008340.2.1	Tomato	plastid	96.55	95.73
TraesCS1D01G452300.1	Wheat	cytosol	62.5	89.51
PGSC0003DMT400031997	Potato	extracellular	90.52	88.24
VIT_02s0025g01500.t01	Wine grape	plastid	82.33	81.28
AT4G23900.1	Thale cress	mitochondrion	80.6	78.9
CDY25267	Canola	plastid	79.31	78.3
CDX94238	Canola	plastid	79.31	78.3
Bra033163.1-P	Field mustard	plastid	79.31	78.3
AT4G11010.1	Thale cress	mitochondrion, plastid	80.17	78.15
CDX86826	Canola	mitochondrion	78.88	77.54
Bra035260.1-P	Field mustard	mitochondrion	78.88	77.54
CDY47613	Canola	mitochondrion	78.88	77.22
Bra013742.1-P	Field mustard	mitochondrion	78.45	76.79
KRH60038	Soybean	mitochondrion	77.59	76.6
KRH41307	Soybean	mitochondrion	77.16	75.85
CDY03508	Canola	mitochondrion, plastid	77.16	75.53
GSMUA_Achr1P11560_001	Banana	mitochondrion	74.57	73.0
Os05t0595400-01	Rice	plastid	75.0	72.8
GSMUA_Achr4P01100_001	Banana	mitochondrion	74.57	72.69
Zm00001d039221_P001	Maize	mitochondrion	71.12	69.62
Zm00001d009774_P001	Maize	mitochondrion	71.12	69.33
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	71.98	69.29
KXG22725	Sorghum	mitochondrion	72.41	69.14
HORVU1Hr1G095400.2	Barley	plastid	71.55	66.94
TraesCS1B01G478800.1	Wheat	plastid	71.12	66.53
Zm00001d004713_P001	Maize	endoplasmic reticulum	52.16	63.35
PGSC0003DMT400080042	Potato	cytosol	36.64	57.43
PGSC0003DMT400039453	Potato	cytosol	34.48	49.08
Zm00001d024444_P001	Maize	plastid	57.33	46.02
PGSC0003DMT400069352	Potato	mitochondrion	40.09	41.52
AT4G23895.3	Thale cress	cytosol	79.74	39.61
CDY40857	Canola	endoplasmic reticulum, golgi	41.38	28.66
PGSC0003DMT400011148	Potato	endoplasmic reticulum	21.12	28.49

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	EntrezGene:102584638	Gene3D:3.30.70.141	MapMan:6.3.2.4
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
InterPro:IPR036850	UniProt:M1A4Y8	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	EnsemblPlantsGene:PGSC0003DMG400005792	PGSC:PGSC0003DMG400005792	EnsemblPlants:PGSC0003DMT400014828	PRINTS:PR01243
ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF91	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI00029485D1
RefSeq:XP_006352246.1	SEG:seg	:	:	:	:

Description

Nucleoside diphosphate kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400005792]

Coordinates

chr8:+:5146924..5149656

Molecular Weight (calculated)

25312.4 Da

IEP (calculated)

10.012

GRAVY (calculated)

-0.181

Length

232 amino acids

Sequence
(BLAST)

001: MNSQICRSAS RATKSLFSSS SRAFSGGRAA AAATTVSLRG VVPSLASYGR TKSQNSCWIS GILALPAAAY MLQEQEAHAA EMERTFIAIK PDGVQRGLIS
101: EILSRFERKG FKLVAIKIVV PSKDFAQKHY HDLKERPFFN GLCGFLSSGP VVAMVWEGEG VIKYGRKLIG ATDPQKSEPG TIRGDLAVVV GRNIIHGSDG
201: PETAKDEIKL WFKPEELVKY TSNTEKWLYG VN

Best Arabidopsis Sequence Match ( AT4G23900.1 )
(BLAST)

001: MSSQICRSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG RKLIGATDPQ KSEPGTIRGD LAVVVGRNII
201: HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN

Arabidopsis Description

NDK4Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LAH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.