Factsheet for PGSC0003DMT400069352

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 10
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117
mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007475
PGSC0003DMT400015465
PGSC0003DMT400023048
PGSC0003DMT400028840
PGSC0003DMT400039453
PGSC0003DMT400047487
PGSC0003DMT400056629
PGSC0003DMT400060448
PGSC0003DMT400069352
PGSC0003DMT400077272

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	PGSC0003DMT400023048	AT2G04630.1	21798944
AT5G63310.1	PGSC0003DMT400077272	AT3G45640.1	12506203
AT5G63310.1	PGSC0003DMT400060448	AT3G55150.1	21798944
AT5G63310.1	PGSC0003DMT400028840	AT5G01820.1	17785451
AT5G63310.1	PGSC0003DMT400056629	AT5G01820.1	17785451
AT5G63310.1	PGSC0003DMT400015465	AT5G13810.1	21798944
AT5G63310.1	PGSC0003DMT400047487	AT5G13810.1	21798944
AT5G63310.1	PGSC0003DMT400007475	AT5G35410.1	17785451
AT5G63310.1	PGSC0003DMT400039453	AT5G63310.1	17785451
AT5G63310.1	PGSC0003DMT400069352	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071960.2.1	Tomato	plastid	92.86	92.86
PGSC0003DMT400039453	Potato	cytosol	56.7	77.91
VIT_17s0000g10280.t01	Wine grape	plastid	71.43	69.57
KRH57193	Soybean	plastid	69.64	69.33
KRH03909	Soybean	plastid	69.2	68.28
KRH16591	Soybean	mitochondrion	58.48	67.18
EES16135	Sorghum	plastid	65.62	66.22
TraesCS5D01G104600.2	Wheat	plastid	64.73	65.91
AT5G63310.1	Thale cress	plastid	67.86	65.8
TraesCS5B01G098300.2	Wheat	cytosol	50.45	65.7
TraesCS5A01G092400.1	Wheat	plastid	64.73	65.61
CDY41513	Canola	plastid	67.41	65.09
Bra038621.1-P	Field mustard	plastid	67.41	65.09
GSMUA_AchrUn_...	Banana	plastid	67.86	64.96
CDX84395	Canola	plastid	66.96	64.66
CDY48138	Canola	plastid	66.07	64.35
Os12t0548300-01	Rice	plastid	62.5	63.64
PGSC0003DMT400080042	Potato	cytosol	41.52	62.84
Zm00001d023833_P001	Maize	plastid	64.73	61.18
KRG89746	Soybean	plastid	59.38	59.38
HORVU5Hr1G024250.1	Barley	mitochondrion	65.18	58.87
PGSC0003DMT400014828	Potato	mitochondrion	41.52	40.09
PGSC0003DMT400031997	Potato	extracellular	42.41	39.92
PGSC0003DMT400011148	Potato	endoplasmic reticulum	25.0	32.56

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	EntrezGene:102604726	Gene3D:3.30.70.141	MapMan:6.3.2.4
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
InterPro:IPR036850	UniProt:M1CKC2	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	EnsemblPlantsGene:PGSC0003DMG400026976	PGSC:PGSC0003DMG400026976	EnsemblPlants:PGSC0003DMT400069352	PRINTS:PR01243
ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF44	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI0002966581
RefSeq:XP_006347398.1	SEG:seg	:	:	:	:

Description

Nucleoside diphosphate kinase 2, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400026976]

Coordinates

chr6:-:52807449..52811263

Molecular Weight (calculated)

24708.0 Da

IEP (calculated)

9.724

GRAVY (calculated)

-0.168

Length

224 amino acids

Sequence
(BLAST)

001: MEGLTIGGAT PCVSSSLRRI SSKTTNFASR LTPKAVKKHS IAAFQPAFHL FSTNVPKRHI KARIFLPHLV ASMEEVEQTY IMIKPDGVQR GLVGEIISRF
101: EKKGFKLTGL KLFQCPKELA EEHYKDLQSK PFFPKLIDYI TSGPVVCMGW EGVGVVASAR KLIGATNPLN AEPGTIRGDF AVQTGRNVVH GSDSPDNGKR
201: EIGLWFKEGE LCAWTAVQEP WLVE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.