Factsheet for PGSC0003DMT400060448

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006709
PGSC0003DMT400012712
PGSC0003DMT400013443
PGSC0003DMT400015076
PGSC0003DMT400063083
PGSC0003DMT400067737
PGSC0003DMT400074781

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55150.1	PGSC0003DMT400006709	AT1G51950.1	21798944
AT3G55150.1	PGSC0003DMT400074781	AT3G56270.1	21798944
AT3G55150.1	PGSC0003DMT400012712	AT4G08150.1	21798944
AT3G55150.1	PGSC0003DMT400015076	AT5G22310.1	21798944
AT3G55150.1	PGSC0003DMT400067737	AT5G22310.1	21798944
AT3G55150.1	PGSC0003DMT400013443	AT5G51110.1	21798944
AT3G55150.1	PGSC0003DMT400063083	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054820.1.1	Tomato	plastid	87.81	88.22
VIT_00s0317g00140.t01	Wine grape	plastid	51.23	53.38
Bra017078.1-P	Field mustard	cytosol	41.36	48.2
CDX73400	Canola	plastid	46.3	47.85
Bra014771.1-P	Field mustard	plastid	46.6	47.78
CDY07003	Canola	cytosol, golgi, mitochondrion, plastid	29.17	47.73
CDX76117	Canola	plastid	46.6	47.71
CDY40204	Canola	plastid	45.68	47.44
AT2G39380.1	Thale cress	plastid	46.45	47.25
Bra007146.1-P	Field mustard	plastid	45.83	47.22
CDX93267	Canola	plastid	43.67	47.17
CDY02916	Canola	plastid	45.99	47.08
AT3G55150.1	Thale cress	plastid	45.99	46.86
CDX74849	Canola	plastid	44.91	46.26
Bra005044.1-P	Field mustard	cytosol, nucleus, plastid	40.74	45.99
CDX74848	Canola	plastid	43.06	45.74
CDY64627	Canola	plastid	45.52	45.67
CDY64629	Canola	plastid	44.91	45.26
CDY44645	Canola	plastid	44.91	45.19
Bra005045.1-P	Field mustard	plastid	44.91	44.91
PGSC0003DMT400028204	Potato	plastid	40.9	44.39
PGSC0003DMT400061494	Potato	plastid	43.36	44.25
PGSC0003DMT400061435	Potato	plastid	43.21	43.55
CDX74850	Canola	plastid	45.06	43.32
Bra005046.1-P	Field mustard	plastid	44.91	43.3
PGSC0003DMT400061436	Potato	plastid	42.9	43.23
PGSC0003DMT400040200	Potato	plastid	39.81	42.79
PGSC0003DMT400078145	Potato	mitochondrion	40.9	42.47
CDY44646	Canola	cytosol	43.83	40.69
GSMUA_AchrUn_...	Banana	cytosol	35.65	40.38
GSMUA_Achr10P...	Banana	mitochondrion	36.42	38.37
GSMUA_Achr10P...	Banana	cytosol	26.54	38.14
GSMUA_Achr7P15340_001	Banana	mitochondrion	35.65	37.87
GSMUA_Achr6P34400_001	Banana	mitochondrion	33.49	35.93
PGSC0003DMT400043775	Potato	cytosol	24.69	27.97
PGSC0003DMT400012539	Potato	extracellular	25.62	27.85
PGSC0003DMT400058947	Potato	cytosol	25.31	26.97
PGSC0003DMT400065456	Potato	cytosol	24.54	25.36
PGSC0003DMT400003687	Potato	nucleus	25.62	25.23
PGSC0003DMT400006075	Potato	cytosol	22.69	24.83
PGSC0003DMT400072333	Potato	cytosol	24.23	24.53
PGSC0003DMT400090181	Potato	cytosol	25.0	24.29
PGSC0003DMT400013431	Potato	nucleus	24.85	24.25
PGSC0003DMT400032221	Potato	nucleus	23.77	23.3
PGSC0003DMT400052043	Potato	nucleus	24.23	22.49
PGSC0003DMT400063083	Potato	cytosol	21.76	22.2

Protein Annotations

EntrezGene:102597723	MapMan:22.6.3.1	InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	GO:GO:0000145	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150
GO:GO:0009987	UniProt:M1C5W1	PFAM:PF03081	EnsemblPlantsGene:PGSC0003DMG400023511	PGSC:PGSC0003DMG400023511	EnsemblPlants:PGSC0003DMT400060448
PANTHER:PTHR12542	PANTHER:PTHR12542:SF26	SUPFAM:SSF74788	UniParc:UPI0002956F90	RefSeq:XP_006346010.1	SEG:seg

Description

ATEXO70H2 [Source:PGSC_GENE;Acc:PGSC0003DMG400023511]

Coordinates

chr5:+:50543421..50545619

Molecular Weight (calculated)

73750.4 Da

IEP (calculated)

7.203

GRAVY (calculated)

-0.209

Length

648 amino acids

Sequence
(BLAST)

001: MAILDMSKRE PSSPSTPQRA KKSLFSFVKT TSSLSSFSSH IPPQKPSLTF SRSIMEENID NADTIIKKWD HKESSNEKFT SLFQEDRKEA KEYIQCVKDL
101: KKAMHFFVTQ HSTCNKLVLA QNLMQKAMKR LENEFYQILS TKKEHLDPES VSKSSQSSHI SRSISVDSSE STDLGNEIQH TTSAESISEA EHLSLLTMSD
201: LKMIADCMID SGYAKECWKI YRIIRKSIVD EGLYRLGIES RSSAYVNAMK PNVLEHQVKH WIDSTKIAVK TLFYGERFLC DHVFSTSKTI NETCFSDIAK
301: EGGIVLLKFP EVVAKTKKSH EKIFLLMDLH ETIAELLPEI ESIFSFDSIS SVKVQAVSSL NKLKISVLNI ISDFELSIQR NSLKTPVPGG GIHPLTNSVA
401: EYLASLASYN GVLSYIISDS TSTTEFSETY FDSALISETP KNSSVCAKLA WIVLVLLCKL DCKAELYNNI ALSYLFLANN IQFIIERVRG SALRIILGDE
501: WILNLERKVK LYSTKYENVA WNKVFMCLPQ SLDPSISSDM IKEHFKRFNE SFEETYQRQK SWVVPDRTLR DEIKVSIARK LVPFYRDFYE YYMVVLSGEK
601: DLEVLVRFSP DNIGNCLSDL FHENVRSRSL ILSSSTSLPN SCVWQCIS

Best Arabidopsis Sequence Match ( AT2G39380.1 )
(BLAST)

001: MSKKPKSVHF STSSPKSFLS SFPSFTSLPA SPLNQTFSQS MMEETVEAAE SIIKKWDPNS PSYTKIISLF SHSRREAKEF IRCIRDLRRA MHFLISQHSK
101: SAKLVLAQHL MQIAMARLEK EFFQILSSNR DQLDPESVSG HSSISSNSEF EDVMQSSDDE EEDELKKAGE TITKVEKAAA LVMSDLKVIA ETMISCGYGK
201: ECIKSYKLIR KSIVDEGLHL LGIEKCKISR FNRMDWDVLE HMIKNWIKAA KIGVITLLRG EKLLCDHVFS ASSTIRESCF YEIVNEAGIN LFKFPELVAE
301: KKPSPERIFR LMDLYAAISD LRPDIELIFH FDSVAAVKTL VLSSLKKLKD SIYTSLMEFE STIQKDSSKA LTAGGGIHKL TRSTMSFISS LSEYSRVLSE
401: ILAEHPLKKN TRMLESYFTA PILEDEHNNH AVSVHLAWLI LIFLCKLDIK AESYKDVSLS YLFLVNNIQF VVDTVRSTHL RNLLGDDWLT KHEAKLRSYA
501: ANYEIAAWAN VYISLPEKTS SRLSPEEAKT HFKRFHAVFE EAYMKQSSCV ITDAKLRNEL KVSIAKKIVP EYREFYGKYL PTLSKERNIE MLVSFKPDNL
601: ENYLSDLFHG TPILSGSSSS SSSLSSSSCI SLGCVRN

Arabidopsis Description

ATEXO70H2Exocyst subunit exo70 family protein H2 [Source:UniProtKB/TrEMBL;Acc:O80625]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.