Factsheet for PGSC0003DMT400040200

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g073010.1.1	Tomato	plastid	93.86	89.27
PGSC0003DMT400028204	Potato	plastid	61.19	61.81
PGSC0003DMT400078145	Potato	mitochondrion	62.85	60.74
VIT_06s0004g04010.t01	Wine grape	plastid	55.22	54.06
KRH29876	Soybean	mitochondrion	49.59	49.1
KRH25009	Soybean	mitochondrion	49.75	48.86
KRH22988	Soybean	plastid	38.31	48.02
KRH10327	Soybean	plastid	46.43	47.22
CDX88720	Canola	plastid	42.62	46.73
CDX71078	Canola	cytosol, mitochondrion, nucleus, plastid	42.45	46.13
CDY49576	Canola	cytosol	41.79	45.73
KRH22987	Soybean	cytosol, mitochondrion, plastid	43.12	45.38
PGSC0003DMT400061435	Potato	plastid	48.09	45.1
Bra006696.1-P	Field mustard	cytosol	46.27	45.0
CDY60562	Canola	cytosol	40.96	44.67
CDY60967	Canola	plastid	28.36	44.65
PGSC0003DMT400061436	Potato	plastid	47.6	44.63
CDY68540	Canola	plastid	40.3	44.34
Bra002537.1-P	Field mustard	cytosol, nucleus, plastid	45.27	43.47
PGSC0003DMT400061494	Potato	plastid	45.77	43.46
AT2G28650.1	Thale cress	plastid	41.29	43.46
CDX93621	Canola	cytosol	32.34	43.43
AT5G59730.1	Thale cress	cytosol, plastid	45.61	43.38
CDX80235	Canola	cytosol, nucleus, plastid	44.61	42.97
Bra020294.1-P	Field mustard	cytosol, plastid	44.11	42.83
CDY04577	Canola	plastid	38.47	42.73
CDY60968	Canola	cytosol	7.13	40.95
GSMUA_AchrUn_...	Banana	cytosol	38.47	40.56
CDX95128	Canola	cytosol, nucleus, plastid	38.97	40.45
Bra018685.1-P	Field mustard	cytosol, nucleus, plastid	38.64	40.31
CDY31722	Canola	mitochondrion, plastid	38.81	40.21
CDX77195	Canola	mitochondrion, plastid	38.64	39.9
AT2G28640.1	Thale cress	mitochondrion	39.97	39.83
Bra035682.1-P	Field mustard	mitochondrion, plastid	39.64	39.83
PGSC0003DMT400060448	Potato	plastid	42.79	39.81
GSMUA_Achr10P...	Banana	mitochondrion	40.46	39.67
GSMUA_Achr7P15340_001	Banana	mitochondrion	40.13	39.67
GSMUA_Achr10P...	Banana	cytosol	29.35	39.25
GSMUA_Achr6P34400_001	Banana	mitochondrion	38.47	38.41
AT1G07725.1	Thale cress	cytosol, nucleus, plastid	38.47	37.72
PGSC0003DMT400012539	Potato	extracellular	29.19	29.53
PGSC0003DMT400058947	Potato	cytosol	29.68	29.44
PGSC0003DMT400090181	Potato	cytosol	28.52	25.79
PGSC0003DMT400003687	Potato	nucleus	27.69	25.38
PGSC0003DMT400043775	Potato	cytosol	23.88	25.17
PGSC0003DMT400065456	Potato	cytosol	25.37	24.4
PGSC0003DMT400032221	Potato	nucleus	26.37	24.05
PGSC0003DMT400006075	Potato	cytosol	22.72	23.14
PGSC0003DMT400072333	Potato	cytosol	24.54	23.12
PGSC0003DMT400013431	Potato	nucleus	24.38	22.14
PGSC0003DMT400052043	Potato	nucleus	24.71	21.35
PGSC0003DMT400063083	Potato	cytosol	21.89	20.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400040200	EnsemblPlantsGene:PGSC0003DMG400015554	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	InterPro:Cullin_repeat-like_dom_sf
InterPro:Exo70	PANTHER:PTHR12542	PANTHER:PTHR12542:SF17	PFAM:PF03081	PGSC:PGSC0003DMG400015554	SEG:seg
SUPFAM:SSF74788	UniParc:UPI00029606D9	UniProt:M1B9I4	MapMan:22.6.3.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400015554]

Coordinates

chr11:-:45193634..45195537

Molecular Weight (calculated)

67590.1 Da

IEP (calculated)

5.091

GRAVY (calculated)

-0.244

Length

603 amino acids

Sequence
(BLAST)

001: MRTGHFSPSR PSSPLHSSTT SNDSPSRHTF SQTLMEDTIN EAGAIIKKWD LDTSSSTSYN RVANLFRDYR EEALKFLDAV TNLQHGMHFV IKECSSSELL
101: VQAQNLMQIA MKRLQKEMYT ILSGNRYFLD SETLSTRSSR QSTRSSVSDE DEHDDEITNT EVSPRASEVE IVSELVMANL KAIADCMIGA GYGKECVKIY
201: NLNRKSVIDE TLYYLGVEKL TSSQIQKMDW EMLEKKTKNW LGSVKIAVST LFHGEKILCD HVFSASDAIR ETCFSEIARE SAITLFAFPE MVAKYKKLSL
301: EKMFTVLDLY NSISELWDEI ELIFSFSSFE IVKSQAMASL VKLGEAARLM LSEFESAIQK DTSKAKAGGG VHPLTRYVMN YLVFLGDYSG AFAEIIGDLP
401: LSVQSPLPES YFMSPIPDED DSPSSAVSVK LAWLVLILLC KLDGKAQLYK DVSLSYLFLA NNLNYVVSKD GMEQRADVIA ENSTAEMSSP EAREWFFKFN
501: SGFEEAYRVQ SSWVIPDPKL RDEVKISLSR KIVSGYRIFY EKYRESLRSG GVKSVVRFAP DDLQNYLSDL FYGTGQSEQG TTAYGSVSPS VSISTASSPS
601: HGR

Best Arabidopsis Sequence Match ( AT2G39380.1 )
(BLAST)

001: MSKKPKSVHF STSSPKSFLS SFPSFTSLPA SPLNQTFSQS MMEETVEAAE SIIKKWDPNS PSYTKIISLF SHSRREAKEF IRCIRDLRRA MHFLISQHSK
101: SAKLVLAQHL MQIAMARLEK EFFQILSSNR DQLDPESVSG HSSISSNSEF EDVMQSSDDE EEDELKKAGE TITKVEKAAA LVMSDLKVIA ETMISCGYGK
201: ECIKSYKLIR KSIVDEGLHL LGIEKCKISR FNRMDWDVLE HMIKNWIKAA KIGVITLLRG EKLLCDHVFS ASSTIRESCF YEIVNEAGIN LFKFPELVAE
301: KKPSPERIFR LMDLYAAISD LRPDIELIFH FDSVAAVKTL VLSSLKKLKD SIYTSLMEFE STIQKDSSKA LTAGGGIHKL TRSTMSFISS LSEYSRVLSE
401: ILAEHPLKKN TRMLESYFTA PILEDEHNNH AVSVHLAWLI LIFLCKLDIK AESYKDVSLS YLFLVNNIQF VVDTVRSTHL RNLLGDDWLT KHEAKLRSYA
501: ANYEIAAWAN VYISLPEKTS SRLSPEEAKT HFKRFHAVFE EAYMKQSSCV ITDAKLRNEL KVSIAKKIVP EYREFYGKYL PTLSKERNIE MLVSFKPDNL
601: ENYLSDLFHG TPILSGSSSS SSSLSSSSCI SLGCVRN

Arabidopsis Description

ATEXO70H2Exocyst subunit exo70 family protein H2 [Source:UniProtKB/TrEMBL;Acc:O80625]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.