CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002537.1-P	Field mustard	cytosol, nucleus, plastid	98.91	86.78
CDX88720	Canola	plastid	85.48	85.64
CDX80235	Canola	cytosol, nucleus, plastid	97.28	85.62
CDX71078	Canola	cytosol, mitochondrion, nucleus, plastid	85.12	84.5
CDY60562	Canola	cytosol	83.12	82.82
CDY68540	Canola	plastid	81.49	81.93
AT5G59730.1	Thale cress	cytosol, plastid	83.85	72.87
VIT_06s0004g04010.t01	Wine grape	plastid	53.18	47.56
CDX93621	Canola	cytosol	38.48	47.22
CDY60968	Canola	cytosol	8.89	46.67
CDY04577	Canola	plastid	45.37	46.04
Solyc06g005280.1.1	Tomato	plastid	48.28	44.48
KRH29876	Soybean	mitochondrion	49.0	44.34
KRH25009	Soybean	mitochondrion	49.18	44.14
PGSC0003DMT400028204	Potato	plastid	47.37	43.72
CDY31722	Canola	mitochondrion, plastid	46.1	43.64
Solyc11g073010.1.1	Tomato	plastid	50.09	43.53
CDX95128	Canola	cytosol, nucleus, plastid	45.73	43.37
CDY60967	Canola	plastid	30.13	43.34
KRH22988	Soybean	plastid	37.57	43.04
KRH10327	Soybean	plastid	46.28	43.0
CDX77195	Canola	mitochondrion, plastid	45.37	42.81
KRH22987	Soybean	cytosol, mitochondrion, plastid	43.74	42.06
PGSC0003DMT400040200	Potato	plastid	45.73	41.79
Solyc06g075610.1.1	Tomato	plastid	47.01	41.57
PGSC0003DMT400078145	Potato	mitochondrion	46.82	41.35
GSMUA_Achr10P...	Banana	cytosol	33.39	40.8
GSMUA_AchrUn_...	Banana	cytosol	41.92	40.38
CDY07003	Canola	cytosol, golgi, mitochondrion, plastid	28.49	39.65
CDY41297	Canola	mitochondrion	42.83	38.82
CDY41604	Canola	cytosol	43.38	38.61
CDY44712	Canola	cytosol	43.01	38.6
GSMUA_Achr6P34400_001	Banana	mitochondrion	39.75	36.26
CDX74849	Canola	plastid	41.02	35.93
CDX76117	Canola	plastid	40.83	35.55
GSMUA_Achr10P...	Banana	mitochondrion	39.56	35.45
CDX74848	Canola	plastid	39.2	35.41
CDX73400	Canola	plastid	40.29	35.41
CDY02916	Canola	plastid	40.47	35.23
CDY64629	Canola	plastid	41.02	35.15
CDY64627	Canola	plastid	41.2	35.14
CDY40204	Canola	plastid	39.75	35.1
CDY44645	Canola	plastid	40.65	34.78
CDX93267	Canola	plastid	37.21	34.17
CDY28574	Canola	cytosol	16.7	34.07
GSMUA_Achr7P15340_001	Banana	mitochondrion	37.57	33.93
CDX73983	Canola	mitochondrion	38.11	33.87
CDY02484	Canola	cytosol	18.51	33.77
CDY07931	Canola	cytosol	38.11	33.55
CDX74850	Canola	plastid	41.02	33.53
CDY44646	Canola	cytosol	39.56	31.23
CDY02822	Canola	cytosol	15.43	29.51
CDX68265	Canola	cytosol	30.85	27.91
CDY50639	Canola	cytosol	30.67	27.75
CDX71629	Canola	cytosol	33.58	27.69
CDY05812	Canola	cytosol, plastid	33.58	27.61
CDY10372	Canola	cytosol	14.52	26.67
CDY04082	Canola	cytosol	26.13	25.13
CDY44387	Canola	cytosol	25.95	25.0
CDX97543	Canola	cytoskeleton, cytosol, nucleus	27.95	24.92
CDY02176	Canola	cytosol	24.68	24.73
CDX69666	Canola	cytosol	8.35	24.34
CDX97230	Canola	cytosol	8.35	24.34
CDY52262	Canola	cytoskeleton, cytosol, nucleus	28.13	23.99
CDX85273	Canola	cytosol	28.13	23.85
CDY61474	Canola	cytosol	21.96	23.82
CDY27076	Canola	cytosol	27.22	23.73
CDX91635	Canola	cytosol	27.22	23.73
CDY44373	Canola	cytosol	24.14	23.62
CDX70300	Canola	cytosol	27.04	23.58
CDX86365	Canola	cytosol	27.59	23.49
CDY10374	Canola	cytosol	27.04	23.35
CDY60022	Canola	cytosol	25.59	22.82
CDY06667	Canola	cytosol	23.41	21.61
CDY10240	Canola	cytosol	23.41	21.61
CDY69943	Canola	cytosol	23.77	20.89
CDX78509	Canola	nucleus	23.77	20.89
CDY70944	Canola	cytosol	15.79	20.52
CDX69615	Canola	cytosol, nucleus, plastid	25.05	20.15
CDY09840	Canola	cytosol, nucleus, plastid	25.05	20.12
CDX70532	Canola	nucleus	24.86	20.09
CDX78551	Canola	nucleus	24.68	19.97
CDX85618	Canola	nucleus	25.05	19.77
CDX91088	Canola	cytosol, nucleus, vacuole	23.41	16.71
CDY23090	Canola	nucleus	25.41	14.93
CDY02823	Canola	cytosol	5.08	11.24

Protein Annotations

Gene3D:1.20.1280.170	MapMan:22.6.3.1	GO:A0A078IHY3	UniProt:A0A078IHY3	EnsemblPlants:CDY49576	ProteinID:CDY49576
ProteinID:CDY49576.1	InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00093306001	PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF17	SUPFAM:SSF74788	UniParc:UPI0004EEEB4F
SEG:seg	:	:	:	:	:

Description

BnaA10g12720DBnaA10g12720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHY3]

Coordinates

chrLK032843:-:73690..75732

Molecular Weight (calculated)

61909.6 Da

IEP (calculated)

6.291

GRAVY (calculated)

-0.245

Length

551 amino acids

Sequence
(BLAST)

001: MGKHLFRSSP PQEKQTAHQS LAETAVQECM SDITTVISKW TSSSDEFLFS TNSRSEAEEF VEVVRHLHST MHRLVAVNPS SEKLIYAQNL MQSAMNLLES
101: EFHRHRFSGG DSDAMDDLKM IADCMISTGY AKECVKVYKT VRRSIVDETL QTLSVERLTL HQIQKMDWEI LEPKIKSWLQ AAKLAVRKLF FGERILADHV
201: FSSSTNIVEA SFTDITQEGA LTLFAFPEHA AKIKKLSPEK MFRFLDMYES LANLFVEIES IFYFDSAAAV RSQVINSLAK LGDAVRFMMS DFETAIQKEA
301: SKTLIVGGGV HPLTRYVMNY LSFLADYDDG GGDDAHPEDL YSSPVSKRIA WVILLTLCKI DGKAQPYKDV ALSYLFLANN LQYVVVKVRS SNLRLLLGDD
401: WVVRHEGKVN QYAEKFEKLA WGKVLTSLPE NPAEEITPEE ARALFARFND EFEAAYRKQI SWVIPDPNLR DRIKISLSQK LMLVCTEFYE VNRFGLGGDA
501: FNARYTPEDI GNYLSDLYFG SRGSGSSSTT TGSGSGTGST TTGKSRGGRS H

Best Arabidopsis Sequence Match ( AT5G59730.1 )
(BLAST)

001: MGKHLFRSSP PPEKPTAHLS LAESAVQECM SNINTVISKW TSPAASSSDD FLFSTNSRRE AEEFVTAVRH LQSTMHRLVS VNPSSEKLIY AQNLMQSAMK
101: LLESEFHRVL KANREYLDPE CVSVRSYRSS RFSTSTTTSV SDSEDESSYE ENADEEHRFS GGDSDAMDDL KMIADCMIST GYAKECVRVY KTVRKSIVDE
201: TLHNLQMERF NLHQVQKMDW EILESKIKTW LKAVKLAVRK LFFGERILAD HVFSSSGLIV ESSFTEITQE GALILFTFPE YASKIKKLTP EKMFRFLDMY
301: EALANLYVEI ESIFYFESAA AVRSQVINSL ARLGDATRLM MTDFESAIQK ETSKTPIIGG GVHPLTRYVM NYLSFLADYS DSIAAIFENW KLSVPTPLPD
401: SLYISGGDEA NPEDLYSSPV SVRIAWVILL TLCKIDGKAQ PYKDVALSYL FLANNLQYVV VKVRSSTLKV LLGDDWVFRH EEKVKLYADK FEKLAWGKVL
501: DLLPEIPTDE ISPEEAKVLV ARFNDEFETS YRKQTSWVIP DPKLRDQIKI TLSQKLMLVC TEFYRMNRFA YGMVGDNEAI SRYTPEDIGN YLSDLYFGSR
601: GSGSVSTAGG SGSGSGSGTG SSSTGKARGG RSSH

Arabidopsis Description

ATEXO70H7AT5g59730/mth12_130 [Source:UniProtKB/TrEMBL;Acc:Q9FN91]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.