Factsheet for VIT_06s0004g04010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0317g00140.t01	Wine grape	plastid	60.39	59.81
KRH25009	Soybean	mitochondrion	58.28	58.47
KRH29876	Soybean	mitochondrion	57.63	58.29
VIT_08s0040g02730.t01	Wine grape	plastid	58.6	56.85
Solyc11g073010.1.1	Tomato	plastid	58.44	56.78
KRH22988	Soybean	plastid	43.67	55.93
PGSC0003DMT400028204	Potato	plastid	54.06	55.78
Solyc06g005280.1.1	Tomato	plastid	53.73	55.35
PGSC0003DMT400040200	Potato	plastid	54.06	55.22
KRH10327	Soybean	plastid	52.76	54.81
PGSC0003DMT400078145	Potato	mitochondrion	54.87	54.17
KRH22987	Soybean	cytosol, mitochondrion, plastid	50.32	54.1
CDY49576	Canola	cytosol	47.56	53.18
Solyc06g075610.1.1	Tomato	plastid	53.73	53.13
CDX88720	Canola	plastid	46.75	52.36
CDY60562	Canola	cytosol	46.92	52.26
CDY68540	Canola	plastid	46.27	52.01
CDX71078	Canola	cytosol, mitochondrion, nucleus, plastid	46.59	51.71
Bra002537.1-P	Field mustard	cytosol, nucleus, plastid	51.62	50.64
CDX80235	Canola	cytosol, nucleus, plastid	51.14	50.32
AT5G59730.1	Thale cress	cytosol, plastid	51.46	50.0
CDX93621	Canola	cytosol	36.36	49.89
Bra006696.1-P	Field mustard	cytosol	50.16	49.84
Bra020294.1-P	Field mustard	cytosol, plastid	50.16	49.76
GSMUA_AchrUn_...	Banana	cytosol	44.81	48.25
AT2G28650.1	Thale cress	plastid	44.48	47.82
GSMUA_Achr10P...	Banana	cytosol	34.42	47.01
CDY04577	Canola	plastid	41.07	46.59
CDY31722	Canola	mitochondrion, plastid	43.67	46.22
CDX77195	Canola	mitochondrion, plastid	43.51	45.89
CDY60968	Canola	cytosol	7.79	45.71
CDY60967	Canola	plastid	28.25	45.43
Bra035682.1-P	Field mustard	mitochondrion, plastid	44.16	45.33
AT2G28640.1	Thale cress	mitochondrion	44.48	45.29
Bra018685.1-P	Field mustard	cytosol, nucleus, plastid	41.72	44.46
CDX95128	Canola	cytosol, nucleus, plastid	41.88	44.41
GSMUA_Achr6P34400_001	Banana	mitochondrion	43.34	44.21
AT1G07725.1	Thale cress	cytosol, nucleus, plastid	43.51	43.58
GSMUA_Achr10P...	Banana	mitochondrion	43.02	43.09
GSMUA_Achr7P15340_001	Banana	mitochondrion	42.37	42.79
VIT_09s0002g00910.t01	Wine grape	cytosol	33.12	33.66
VIT_17s0000g01450.t01	Wine grape	cytosol	33.28	31.2
VIT_14s0068g00250.t01	Wine grape	cytosol	32.31	30.52
VIT_13s0073g00170.t01	Wine grape	cytosol	29.22	27.69
VIT_17s0000g07350.t01	Wine grape	cytosol	28.73	27.53
VIT_01s0146g00160.t01	Wine grape	nucleus	28.57	26.91
VIT_08s0007g02340.t01	Wine grape	cytosol	28.08	26.7
VIT_06s0004g07440.t01	Wine grape	cytosol	25.97	25.52

Protein Annotations

Gene3D:1.20.1280.170	EntrezGene:100248374	wikigene:100248374	MapMan:22.6.3.1	EMBL:AM427503	ProteinID:CAN66786
ProteinID:CAN66786.1	ProteinID:CCB43611	ProteinID:CCB43611.1	InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	UniProt:F6GTU7
EMBL:FN594951	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	EntrezGene:LOC100248374	wikigene:LOC100248374
PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF26	SUPFAM:SSF74788	UniParc:UPI0001983692	ArrayExpress:VIT_06s0004g04010
EnsemblPlantsGene:VIT_06s0004g04010	EnsemblPlants:VIT_06s0004g04010.t01	unigene:Vvi.23552	RefSeq:XP_002281519	RefSeq:XP_002281519.2	SEG:seg

Description

No Description!

Coordinates

chr6:-:4995327..4997467

Molecular Weight (calculated)

69582.1 Da

IEP (calculated)

6.318

GRAVY (calculated)

-0.351

Length

616 amino acids

Sequence
(BLAST)

001: MRTIFFKASS PSSSHQSSPS RAPSSPLHES MMDENIDNAQ SVISKWYSDE SSFANFTSLF HSSRSEAKQF LSAVADLQRA MHFFVNHDST SEKLIRSQNL
101: MQLAMKRLEK EFYQILSSSR EYLDPESVSS HVSARSSISD FEDDRASEEE FGASIESVSG VERESELAMA DLKAIADCMI SSGYGKECVK IYKLVRKSIV
201: DESLYHLGVE RLSYSQIQKM DWELIENKIR HWLNAVKAAV KTLFYGERIL CDRVFSASDS IRESCFSEIT KEGALSLFGF PEHVARCKKT PEKMFRILDL
301: YESISDLWPE IDSIFSFEST SAVLSQATSA LIRLGEAVRT MLSDFEAAIQ KDSSKTPIRG GGVHPLTRYV MNYVSFLSDY SGVLSVIVAE WPLTVQSSMP
401: ESYFENPKSD DDPTSAISLR LAWLVLVLLC KLDGRAKLYK DVSLSYIFLA NNLQYVTTKV RTSNIRYLLG DDWIAKHEIK VKQYASNYER MGWSKVFSSL
501: PENPSADISP EKAKECFKKF NSAFEEVYRK QTSWVVPDNK LQEEIKLSIA KKLEPTYRAF YEKNRARLRR EPGSESVVRF APDDMGNYLS DLFYGTGVSG
601: STSSSSSSSP SSLSRG

Best Arabidopsis Sequence Match ( AT2G39380.1 )
(BLAST)

001: MSKKPKSVHF STSSPKSFLS SFPSFTSLPA SPLNQTFSQS MMEETVEAAE SIIKKWDPNS PSYTKIISLF SHSRREAKEF IRCIRDLRRA MHFLISQHSK
101: SAKLVLAQHL MQIAMARLEK EFFQILSSNR DQLDPESVSG HSSISSNSEF EDVMQSSDDE EEDELKKAGE TITKVEKAAA LVMSDLKVIA ETMISCGYGK
201: ECIKSYKLIR KSIVDEGLHL LGIEKCKISR FNRMDWDVLE HMIKNWIKAA KIGVITLLRG EKLLCDHVFS ASSTIRESCF YEIVNEAGIN LFKFPELVAE
301: KKPSPERIFR LMDLYAAISD LRPDIELIFH FDSVAAVKTL VLSSLKKLKD SIYTSLMEFE STIQKDSSKA LTAGGGIHKL TRSTMSFISS LSEYSRVLSE
401: ILAEHPLKKN TRMLESYFTA PILEDEHNNH AVSVHLAWLI LIFLCKLDIK AESYKDVSLS YLFLVNNIQF VVDTVRSTHL RNLLGDDWLT KHEAKLRSYA
501: ANYEIAAWAN VYISLPEKTS SRLSPEEAKT HFKRFHAVFE EAYMKQSSCV ITDAKLRNEL KVSIAKKIVP EYREFYGKYL PTLSKERNIE MLVSFKPDNL
601: ENYLSDLFHG TPILSGSSSS SSSLSSSSCI SLGCVRN

Arabidopsis Description

ATEXO70H2Exocyst subunit exo70 family protein H2 [Source:UniProtKB/TrEMBL;Acc:O80625]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.