Factsheet for VIT_13s0073g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043775	Potato	cytosol	74.0	84.09
KRH34637	Soybean	cytosol	82.15	83.31
KRG92152	Soybean	cytosol	82.62	82.87
CDX70300	Canola	cytosol	80.0	82.28
Solyc04g009740.2.1	Tomato	nucleus	82.15	82.03
Bra009523.1-P	Field mustard	cytosol	80.31	81.82
CDY10374	Canola	cytosol	80.31	81.82
VIT_08s0007g02340.t01	Wine grape	cytosol	81.23	81.48
Solyc11g006620.1.1	Tomato	cytosol	81.69	80.7
AT5G03540.3	Thale cress	cytosol	81.54	79.82
Bra028829.1-P	Field mustard	cytosol	38.77	78.02
KRG88728	Soybean	cytosol	77.85	77.61
OQU82911	Sorghum	cytosol	55.69	74.79
CDY10372	Canola	cytosol	34.31	74.33
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	66.62	73.76
CDY44373	Canola	cytosol	63.54	73.36
Os11t0157400-01	Rice	plasma membrane	72.0	72.78
Zm00001d052779_P001	Maize	cytosol, mitochondrion	70.77	72.56
TraesCS4B01G115200.1	Wheat	cytosol, mitochondrion	70.77	71.21
HORVU4Hr1G021040.3	Barley	mitochondrion	71.38	71.06
TraesCS4D01G112900.1	Wheat	cytosol, mitochondrion	70.46	70.9
TraesCS4A01G200100.3	Wheat	cytosol, mitochondrion	70.62	70.51
KRG90170	Soybean	cytosol	39.85	69.44
Os12t0159700-00	Rice	plasma membrane	68.46	69.1
GSMUA_Achr5P26180_001	Banana	cytosol	69.08	68.86
EES13134	Sorghum	cytosol	66.15	68.04
Os04t0685600-01	Rice	plasma membrane	65.38	67.03
Zm00001d001765_P001	Maize	mitochondrion	65.69	66.61
TraesCS2D01G596000.1	Wheat	cytosol, mitochondrion, nucleus	64.62	65.93
TraesCS2A01G583800.2	Wheat	cytosol, mitochondrion, nucleus	64.46	65.78
TraesCS2B01G602800.1	Wheat	mitochondrion	64.46	65.78
GSMUA_Achr2P20450_001	Banana	plastid	64.77	63.02
HORVU2Hr1G123320.1	Barley	cytosol	64.46	58.44
TraesCS5A01G125500.1	Wheat	cytosol, mitochondrion	57.23	58.4
Zm00001d023472_P001	Maize	cytosol	56.31	58.37
TraesCS5D01G133200.1	Wheat	cytosol	57.54	57.98
HORVU5Hr1G040140.3	Barley	cytosol	52.92	57.43
KXG23006	Sorghum	cytosol	55.23	56.89
Zm00001d023469_P001	Maize	cytosol	53.08	51.11
Os04t0685500-02	Rice	cytosol	40.15	48.16
HORVU2Hr1G123350.29	Barley	cytosol	40.15	48.16
TraesCS2D01G596100.1	Wheat	cytosol	46.77	47.72
TraesCS2A01G583700.1	Wheat	cytosol, plastid	46.62	47.72
TraesCS2B01G602900.1	Wheat	plastid	46.0	47.09
VIT_09s0002g00910.t01	Wine grape	cytosol	31.23	33.5
VIT_17s0000g01450.t01	Wine grape	cytosol	31.54	31.2
VIT_14s0068g00250.t01	Wine grape	cytosol	29.54	29.45
VIT_06s0004g04010.t01	Wine grape	plastid	27.69	29.22
VIT_06s0004g07440.t01	Wine grape	cytosol	28.15	29.19
VIT_01s0146g00160.t01	Wine grape	nucleus	28.77	28.59
VIT_17s0000g07350.t01	Wine grape	cytosol	28.15	28.46
VIT_00s0317g00140.t01	Wine grape	plastid	27.08	28.3
VIT_08s0040g02730.t01	Wine grape	plastid	25.54	26.14

Protein Annotations

EntrezGene:100253247	wikigene:100253247	MapMan:22.6.3.1	ProteinID:CCB49568	ProteinID:CCB49568.1	ncoils:Coil
InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	UniProt:F6HBF9	EMBL:FN595510	GO:GO:0000003	GO:GO:0000145
GO:GO:0000919	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0006887
GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009504
GO:GO:0009506	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0010102	GO:GO:0016020
GO:GO:0016043	GO:GO:0016049	GO:GO:0032502	GO:GO:0040007	GO:GO:0042814	GO:GO:0048354
GO:GO:0048364	GO:GO:0060918	GO:GO:0070062	GO:GO:0090404	GO:GO:1901703	EntrezGene:LOC100253247
wikigene:LOC100253247	PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF78	SUPFAM:SSF74788	TIGR:TC51746
TIGR:TC66854	UniParc:UPI00015CBF5F	ArrayExpress:VIT_13s0073g00170	EnsemblPlantsGene:VIT_13s0073g00170	EnsemblPlants:VIT_13s0073g00170.t01	unigene:Vvi.7183
RefSeq:XP_002268110	RefSeq:XP_002268110.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:-:13478326..13512016

Molecular Weight (calculated)

73690.9 Da

IEP (calculated)

8.308

GRAVY (calculated)

-0.443

Length

650 amino acids

Sequence
(BLAST)

001: MGVAVGMDAL SERAAMMRES VQKSQTISDS IVSILGSFDH RLSALETAMR PTQIRTHSIR RAHENIDKTL KAAEVILAQF DLYRQAEGKV LRGPQEDLES
101: YLESIDQLRS NIRFFSSNKS FKSNDGVVNH ANNLLAKAIS KLEEEFKQLL SSYSKPVEPD RLFDGLPNSL RPSSGSPGNQ ADSSIKALSN NHSEHQNSNL
201: ETAVYTPPTL IPPRVLPLLH DLAQQMVQAG HQQQLLKIYR DTRSSVFEES LRKLGVEKLS KDDVQKMQWE VLEAKIGNWI HFMRIAVKLL FAGERKVCDQ
301: IFQGFDSLSD QCFAEVTASS VSVLLSFGEA IARSKRSPEK LFVLLDMYEI MRELHSEIET IFKGKACTEI RESALGLTKR LAQTAQETFG DFEEAVEKDA
401: TKTAVSDGTV HPLTSYVINY VKFLFDYQST LKQLFQEFEN EKETTSQLAS VTMRIMHALQ TNLDGKSKQY KDPALTHLFL MNNIHYMVRS VRRSEAKDLL
501: GDDWVQRHRR IVQQHANQYK RNAWAKILQC LTIQALTSSG GGSTVGTDGG NSSGVSRAMV KDRFKTFNMQ FEELHQKQSQ WTVPDTELRE SLRLAVAEVL
601: LPAYRNFIKR FGPLVESGKN PQKYIRFTAE DLERMLGEFF EGRTLNEAKR

Best Arabidopsis Sequence Match ( AT5G03540.1 )
(BLAST)

001: MAVDSRMDLL SERAVLMRAS LQKSQTITDN VVSILGSFDS RLSALETAMR PTQIRTHAIR KAHENIDRTL KAAEVILSQF DLLRQAETKV LKGPHEDLES
101: YLDAIAQLRK IIRYFMSNKS FKSSDGVLNH ANSLLAKAQS KLEEEFKQLL ASYSKAVEPD RLFDGLPNSL RPSSDGDGGG KPHGGHHNDD AETAAYTLPI
201: LIPSRVLPLL HDLAQQMVQA GHQQQLLQIY RDTRSFVLEE SLKKLGVEKL SKEDVQRMQW EVLEAKIGNW IHFMRIAVKL LFAGERQVCD QIFRGFDSLS
301: DQCFAEVTVS SVSMLLSFGD AIARSKRSPE KLFVLLDMYE IMRELHTEIE TIFKGKACLE IRDSATGLTK RLAQTAQETF GDFEEAVEKD ATKTAVLDGT
401: VHPLTSYVIN YVKFLFDYQT TLKQLFLEFG NGDDSNSQLA SVTMRIMQAL QNNLDGKSKQ YKDPALTHLF LMNNIHYMVR SVRRSEAKDL LGDDWVQRHR
501: RIVQQHANQY KRVAWTKILQ SSSAQGLTSS GGGSLEGGNS SGVSRGLLKE RFKMFNMQFD ELHQRQSQWT VPDTELRESL RLAVAEVLLP AYRSFLKRFG
601: PLVESGKNPQ KYIKYTAEDL ERLLGELFEG KSMNEPRR

Arabidopsis Description

ATEXO70A1Exocyst subunit exo70 family protein A1 [Source:UniProtKB/TrEMBL;Acc:F4KGM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.