Factsheet for Solyc04g009740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043775	Potato	cytosol	83.87	95.45
Solyc11g006620.1.1	Tomato	cytosol	85.41	84.5
VIT_13s0073g00170.t01	Wine grape	cytosol	82.03	82.15
KRH34637	Soybean	cytosol	79.42	80.66
KRG92152	Soybean	cytosol	79.42	79.78
CDX70300	Canola	cytosol	76.96	79.27
Bra009523.1-P	Field mustard	cytosol	77.42	79.0
CDY10374	Canola	cytosol	77.42	79.0
AT5G03540.3	Thale cress	cytosol	78.49	76.96
Bra028829.1-P	Field mustard	cytosol	37.79	76.16
CDY10372	Canola	cytosol	34.72	75.33
KRG88728	Soybean	cytosol	74.65	74.54
OQU82911	Sorghum	cytosol	54.38	73.14
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	64.52	71.55
Zm00001d052779_P001	Maize	cytosol, mitochondrion	69.43	71.29
Os11t0157400-01	Rice	plasma membrane	69.43	70.3
HORVU4Hr1G021040.3	Barley	mitochondrion	70.2	69.98
TraesCS4B01G115200.1	Wheat	cytosol, mitochondrion	69.43	69.97
Solyc10g081940.1.1	Tomato	cytosol	68.66	69.84
TraesCS4A01G200100.3	Wheat	cytosol, mitochondrion	69.74	69.74
TraesCS4D01G112900.1	Wheat	cytosol, mitochondrion	69.12	69.66
CDY44373	Canola	cytosol	59.75	69.09
KRG90170	Soybean	cytosol	39.17	68.36
Os12t0159700-00	Rice	plasma membrane	66.05	66.77
GSMUA_Achr5P26180_001	Banana	cytosol	66.05	65.95
EES13134	Sorghum	cytosol	63.9	65.82
Os04t0685600-01	Rice	plasma membrane	63.59	65.3
Zm00001d001765_P001	Maize	mitochondrion	63.59	64.59
TraesCS2D01G596000.1	Wheat	cytosol, mitochondrion, nucleus	62.52	63.89
TraesCS2A01G583800.2	Wheat	cytosol, mitochondrion, nucleus	62.52	63.89
TraesCS2B01G602800.1	Wheat	mitochondrion	62.37	63.74
GSMUA_Achr2P20450_001	Banana	plastid	63.13	61.53
HORVU5Hr1G040140.3	Barley	cytosol	53.3	57.93
TraesCS5A01G125500.1	Wheat	cytosol, mitochondrion	56.07	57.3
TraesCS5D01G133200.1	Wheat	cytosol	56.68	57.21
Zm00001d023472_P001	Maize	cytosol	54.69	56.78
HORVU2Hr1G123320.1	Barley	cytosol	62.52	56.76
KXG23006	Sorghum	cytosol	54.07	55.78
Zm00001d023469_P001	Maize	cytosol	52.23	50.37
TraesCS2D01G596100.1	Wheat	cytosol	46.7	47.72
TraesCS2A01G583700.1	Wheat	cytosol, plastid	46.54	47.72
Os04t0685500-02	Rice	cytosol	39.63	47.6
HORVU2Hr1G123350.29	Barley	cytosol	39.48	47.42
TraesCS2B01G602900.1	Wheat	plastid	45.93	47.09
Solyc03g111320.1.1	Tomato	cytosol	33.49	32.78
Solyc06g062990.1.1	Tomato	cytosol	29.95	32.72
Solyc08g066070.1.1	Tomato	cytosol	31.64	32.65
Solyc03g122240.2.1	Tomato	nucleus	28.88	32.08
Solyc02g088800.1.1	Tomato	nucleus	29.65	29.29
Solyc05g024340.1.1	Tomato	cytosol	26.27	28.89
Solyc06g005280.1.1	Tomato	plastid	25.96	28.26
Solyc11g073010.1.1	Tomato	plastid	26.57	27.29
Solyc06g075610.1.1	Tomato	plastid	25.96	27.13
Solyc01g009880.2.1	Tomato	nucleus	27.65	27.11
Solyc03g115070.1.1	Tomato	cytosol	26.11	26.77
Solyc05g054820.1.1	Tomato	plastid	26.27	26.51
Solyc09g005840.1.1	Tomato	plastid	25.81	26.42
Solyc09g005830.1.1	Tomato	plastid	25.35	25.86
Solyc02g094370.1.1	Tomato	cytosol	26.73	24.37

Protein Annotations

EnsemblPlants:Solyc04g009740.2.1	EnsemblPlantsGene:Solyc04g009740.2	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	InterPro:Cullin_repeat-like_dom_sf
InterPro:Exo70	ncoils:Coil	PANTHER:PTHR12542	PANTHER:PTHR12542:SF78	PFAM:PF03081	SEG:seg
SUPFAM:SSF74788	UniParc:UPI0002765A10	UniProt:K4BPC9	MapMan:22.6.3.1	:	:

Description

No Description!

Coordinates

chr4:-:3062113..3072311

Molecular Weight (calculated)

73122.2 Da

IEP (calculated)

7.519

GRAVY (calculated)

-0.378

Length

651 amino acids

Sequence
(BLAST)

001: MGISRNSGGV GGVVGGVDML SERARMMRDS LQKSQSITDN VVNILGSFDH RLSALETAMR PTQIRTHAIR TAHGNIDKAL KAAEVILSQF DISRQAEIKI
101: LKGPHEDLES YLQAIDQLRD NIRFFSNNKS FKSSDGVLNH ANSLLTKAIL KLEEEFKQLL LSYSKPIEPD RLFECLPNSM RPPSSPGHQD SSGKSHLSNS
201: NAEQDGAGNA VFTPPTLIPP RILPLLHDLA QQMVQAGHQQ QFIKIYRDTR SPVLEESLRS LGVEKLSKDD VQKMQWEVLE AKIGNWIHFM RIAVKLLFAG
301: ERKVCDQVLE GFDSLNDQCF AEVTTASVAV LLSFGDAIAK SKRSPEKLFV LLDMYEIMRE LHSEIESLFR GKACNEIKES AFGLTKQLAQ TAQETFGDFE
401: EAVEKDATKT AVSDGTVHPL TSYVINYVKF LFDYQSTLKQ LFQEFENGGD SNSQLAAVTM RIMQALQTNL DGKSKQYKDS ALTHLFLMNN IHYMVRSVRR
501: SEAKDLLGDD WVQRHRRVVQ QHANQYKRIA WAKILQSLSI QGLTSSGGSS SSGVDGQNSS GVSRSTVKER FKMFNAQFEE LHQRQSQWAV PDTELRESLR
601: LAVAEVLLPA YRSFIKRFGP LVESGKNAQK YVRYSAEDLD RMLGEFFEVA T

Best Arabidopsis Sequence Match ( AT5G03540.1 )
(BLAST)

001: MAVDSRMDLL SERAVLMRAS LQKSQTITDN VVSILGSFDS RLSALETAMR PTQIRTHAIR KAHENIDRTL KAAEVILSQF DLLRQAETKV LKGPHEDLES
101: YLDAIAQLRK IIRYFMSNKS FKSSDGVLNH ANSLLAKAQS KLEEEFKQLL ASYSKAVEPD RLFDGLPNSL RPSSDGDGGG KPHGGHHNDD AETAAYTLPI
201: LIPSRVLPLL HDLAQQMVQA GHQQQLLQIY RDTRSFVLEE SLKKLGVEKL SKEDVQRMQW EVLEAKIGNW IHFMRIAVKL LFAGERQVCD QIFRGFDSLS
301: DQCFAEVTVS SVSMLLSFGD AIARSKRSPE KLFVLLDMYE IMRELHTEIE TIFKGKACLE IRDSATGLTK RLAQTAQETF GDFEEAVEKD ATKTAVLDGT
401: VHPLTSYVIN YVKFLFDYQT TLKQLFLEFG NGDDSNSQLA SVTMRIMQAL QNNLDGKSKQ YKDPALTHLF LMNNIHYMVR SVRRSEAKDL LGDDWVQRHR
501: RIVQQHANQY KRVAWTKILQ SSSAQGLTSS GGGSLEGGNS SGVSRGLLKE RFKMFNMQFD ELHQRQSQWT VPDTELRESL RLAVAEVLLP AYRSFLKRFG
601: PLVESGKNPQ KYIKYTAEDL ERLLGELFEG KSMNEPRR

Arabidopsis Description

ATEXO70A1Exocyst subunit exo70 family protein A1 [Source:UniProtKB/TrEMBL;Acc:F4KGM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.