Factsheet for Solyc03g122240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058947	Potato	cytosol	98.46	94.9
Solyc06g062990.1.1	Tomato	cytosol	86.01	84.56
VIT_09s0002g00910.t01	Wine grape	cytosol	74.57	72.11
KRH47637	Soybean	endoplasmic reticulum	75.77	70.93
Bra003879.1-P	Field mustard	cytosol, nucleus, plastid	69.45	67.95
CDX68265	Canola	cytosol	70.31	67.65
CDY50639	Canola	cytosol	70.31	67.65
Os08t0455700-01	Rice	cytosol	4.1	66.67
KRH06215	Soybean	cytosol	75.09	65.97
AT1G72470.1	Thale cress	nucleus	71.16	65.88
GSMUA_Achr10P...	Banana	cytosol	63.14	63.14
GSMUA_Achr9P14390_001	Banana	cytosol	59.56	61.66
OQU89565	Sorghum	cytosol	60.58	57.07
Os09t0439600-01	Rice	cytosol	61.43	56.43
EES13957	Sorghum	cytosol	60.07	55.7
Zm00001d005816_P001	Maize	cytosol	59.9	55.1
Zm00001d020617_P001	Maize	cytosol	59.9	55.02
Zm00001d032075_P001	Maize	cytosol	59.22	54.99
TraesCS5A01G213100.1	Wheat	cytosol	55.8	54.68
TraesCS5B01G210700.1	Wheat	cytosol	55.63	54.61
Zm00001d050095_P001	Maize	cytosol	58.19	54.47
TraesCS5D01G218900.1	Wheat	cytosol	55.29	53.91
TraesCS7B01G182000.2	Wheat	cytosol	58.02	53.21
TraesCS7D01G290600.1	Wheat	cytosol	58.19	53.03
TraesCS7A01G290900.2	Wheat	cytosol	57.85	52.8
HORVU5Hr1G062200.3	Barley	cytosol	60.92	50.78
GSMUA_Achr10P...	Banana	cytosol	48.29	50.45
HORVU7Hr1G064400.2	Barley	cytosol	51.88	43.18
Solyc03g111320.1.1	Tomato	cytosol	45.9	40.45
Solyc08g066070.1.1	Tomato	cytosol	35.32	32.81
Solyc02g088800.1.1	Tomato	nucleus	36.18	32.17
Solyc05g024340.1.1	Tomato	cytosol	30.72	30.41
Solyc10g081940.1.1	Tomato	cytosol	32.76	30.0
Solyc11g006620.1.1	Tomato	cytosol	32.76	29.18
Solyc09g005840.1.1	Tomato	plastid	31.4	28.93
Solyc04g009740.2.1	Tomato	nucleus	32.08	28.88
Solyc11g073010.1.1	Tomato	plastid	31.23	28.86
Solyc09g005830.1.1	Tomato	plastid	31.06	28.53
Solyc06g005280.1.1	Tomato	plastid	29.01	28.43
Solyc01g009880.2.1	Tomato	nucleus	32.08	28.31
Solyc06g075610.1.1	Tomato	plastid	29.86	28.09
Solyc02g094370.1.1	Tomato	cytosol	33.45	27.45
Solyc03g115070.1.1	Tomato	cytosol	29.35	27.09
Solyc05g054820.1.1	Tomato	plastid	26.45	24.03
Zm00001d050972_P005	Maize	cytosol, peroxisome, plasma membrane	48.63	22.97

Protein Annotations

EnsemblPlants:Solyc03g122240.2.1	EnsemblPlantsGene:Solyc03g122240.2	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	InterPro:Cullin_repeat-like_dom_sf
InterPro:Exo70	PANTHER:PTHR12542	PANTHER:PTHR12542:SF27	PFAM:PF03081	SEG:seg	SUPFAM:SSF74788
UniParc:UPI00027659E2	UniProt:K4BN22	MapMan:22.6.3.1	:	:	:

Description

No Description!

Coordinates

chr3:+:70128576..70130975

Molecular Weight (calculated)

66700.1 Da

IEP (calculated)

5.350

GRAVY (calculated)

-0.339

Length

586 amino acids

Sequence
(BLAST)

001: MEAPENDAVA FESAEKIILR WDSTVSEEAR EKMIFDADRY EINRYLHAVD EIQRSMESTT LSDDQDKANS AIQIAMARLE DEFRSILVAH TNAIEADSLT
101: DPSPSPVHSG EFQLPVEDYH DTLTDDDSFT KELEHQESSS SSYRSTSSIR EVDLMPPVAI YDLRSIAERM ISAGYLRECI QVYGSVRKSA VESSFRKLGI
201: EKLSIGDIQR LDWETLETKI RRWIRAAKVC VRILFASEKK LCEQIFEGLG TVTDDACFME TIKGPAIQLF NFAEAISISR RSPEKLFKIL DLHDALSDLL
301: PDVEIVFESK SSESIRVQAV EILSRLGEAA RGILSEFENA VLREPSKVPV PGGTIHPLTR YPSTGSRYSS DPNTPDMDFA DLDGLTPLAL HLIWIIVILQ
401: FNLEGKSKHY RDTSLAHLFM MNNVHYIVHK TKGSPELGEM IVDDFLRKLT GKFRQAATSY QRATWVKVLH CLRDEGLHVS GSFSSGVSKS ALRERFKTFN
501: ALFEEVHRTQ STWLIPDTQL REELRISIAE KLIPAYRSFL GRFRSHIESG RHPENYIKYT VEDLENAVLD FFEGYAVSQH LRRRSQ

Best Arabidopsis Sequence Match ( AT1G72470.1 )
(BLAST)

001: MEPHDQTHGG DGGEGENCSV SGFDSAEKVI IRWDATASEE AREKMIFNDP QEVNLYLNAV DEIQKYVSSG GEIENRANSA IQIAMARLED EFRNILVSHS
101: SPINSDSLML SSSSSSHLEV DEDGSSSNNG NEEDDQQEEE ETDLLKRSGS SASTGSATVR LPTGRGSYSR STSSIREIEL IPIESVIHLS WIARRMVSAG
201: YLRECIQVYG SVRKSAVDSS FRRLGIEKLS IGDVQRLNWE ALEQKIRRWI RAAKICVRVV FASEKLLCEH VFESVGAVNI HEACFMETVK GPAIQLFNFA
301: EAISISRRSP EKLFKILDLH DALIELLPDI ESVFDLKSSD SIRVQAAEIL SRLAEAARGI LSEFENAVLR EPSRVPVPGG TIHPLTRYVM NYISLISEYR
401: PTLIDLIMSK PSRNATDSNT PDFDFSELEN NKGPLALHLI WIIVILQFNL EGKSKYYKNA ALSHLFIMNN AHYIVQKIKG SPELREMIGD LYLRKLTGKF
501: RQAATYYQRA AWVKVLYCLR DEGLHTKGSF SSGVSRSALR ERFKSFNALF EEVHRVQSQW LVPDSQLREE LKISILEKLS PAYRSFLGRF RSHIESGKHP
601: ENYIKISVED LETEVLDLFE GYSATQHLRR RSE

Arabidopsis Description

ATEXO70D1Exocyst subunit exo70 family protein D1 [Source:UniProtKB/TrEMBL;Acc:Q9C9E5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.