Factsheet for Solyc06g005280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028204	Potato	plastid	93.31	93.47
Solyc11g073010.1.1	Tomato	plastid	63.71	60.09
Solyc06g075610.1.1	Tomato	plastid	60.37	57.95
VIT_06s0004g04010.t01	Wine grape	plastid	55.35	53.73
CDX88720	Canola	plastid	45.48	49.45
CDY68540	Canola	plastid	45.15	49.27
CDY60562	Canola	cytosol	45.15	48.82
KRH29876	Soybean	mitochondrion	49.5	48.6
CDX71078	Canola	cytosol, mitochondrion, nucleus, plastid	44.82	48.29
CDY49576	Canola	cytosol	44.48	48.28
KRH22988	Soybean	plastid	38.46	47.82
KRH25009	Soybean	mitochondrion	49.0	47.72
Bra006696.1-P	Field mustard	cytosol	47.83	46.13
KRH22987	Soybean	cytosol, mitochondrion, plastid	44.15	46.07
KRH10327	Soybean	plastid	45.65	46.04
Bra020294.1-P	Field mustard	cytosol, plastid	47.49	45.73
AT5G59730.1	Thale cress	cytosol, plastid	48.33	45.58
Solyc09g005830.1.1	Tomato	plastid	48.49	45.45
CDX93621	Canola	cytosol	34.11	45.43
Bra002537.1-P	Field mustard	cytosol, nucleus, plastid	47.16	44.9
CDX80235	Canola	cytosol, nucleus, plastid	46.49	44.41
Solyc09g005840.1.1	Tomato	plastid	46.49	43.71
AT2G28650.1	Thale cress	plastid	41.81	43.63
CDY04577	Canola	plastid	38.63	42.54
CDY31722	Canola	mitochondrion, plastid	40.97	42.1
CDY60968	Canola	cytosol	7.36	41.9
CDX77195	Canola	mitochondrion, plastid	40.47	41.44
GSMUA_Achr10P...	Banana	cytosol	31.1	41.24
Bra035682.1-P	Field mustard	mitochondrion, plastid	41.14	41.0
CDY60967	Canola	plastid	26.09	40.73
AT2G28640.1	Thale cress	mitochondrion	40.97	40.5
Bra018685.1-P	Field mustard	cytosol, nucleus, plastid	39.13	40.48
CDX95128	Canola	cytosol, nucleus, plastid	39.3	40.45
GSMUA_AchrUn_...	Banana	cytosol	38.63	40.38
Solyc05g054820.1.1	Tomato	plastid	43.14	40.0
AT1G07725.1	Thale cress	cytosol, nucleus, plastid	38.8	37.72
GSMUA_Achr10P...	Banana	mitochondrion	38.63	37.56
GSMUA_Achr6P34400_001	Banana	mitochondrion	37.79	37.42
GSMUA_Achr7P15340_001	Banana	mitochondrion	37.29	36.56
Solyc06g062990.1.1	Tomato	cytosol	28.93	29.03
Solyc03g122240.2.1	Tomato	nucleus	28.43	29.01
Solyc02g088800.1.1	Tomato	nucleus	31.77	28.83
Solyc08g066070.1.1	Tomato	cytosol	28.26	26.78
Solyc03g111320.1.1	Tomato	cytosol	29.26	26.32
Solyc10g081940.1.1	Tomato	cytosol	28.09	26.25
Solyc04g009740.2.1	Tomato	nucleus	28.26	25.96
Solyc11g006620.1.1	Tomato	cytosol	28.09	25.53
Solyc05g024340.1.1	Tomato	cytosol	23.41	23.65
Solyc03g115070.1.1	Tomato	cytosol	25.08	23.62
Solyc01g009880.2.1	Tomato	nucleus	23.91	21.54
Solyc02g094370.1.1	Tomato	cytosol	25.59	21.43

Protein Annotations

Gene3D:1.20.1280.170	MapMan:22.6.3.1	InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	GO:GO:0000145	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150
GO:GO:0009987	UniProt:K4C312	PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF17	SUPFAM:SSF74788
EnsemblPlantsGene:Solyc06g005280.1	EnsemblPlants:Solyc06g005280.1.1	UniParc:UPI0002765B28	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:289806..291602

Molecular Weight (calculated)

67679.5 Da

IEP (calculated)

6.150

GRAVY (calculated)

-0.051

Length

598 amino acids

Sequence
(BLAST)

001: MKTPFFSSSK SSSSSSSTSF CESLMEETIQ NSQSIINKWD LNASSISTST SYNRVANLFR DNPLEAKHLL ESVNDLQHAM QFVIKDKSTS KLLVRAHNLI
101: QIAIKRLQKE FYTILSGSSY FLDHETMSSS RTSKSSMEDE VSESVMADLK AIADCMIAAG YGRECVKLYK VHRKSVIDQT LFYLGIEKLN SYQVQKMDWE
201: LMEAKIKNWL SSVKIAVNAL FRGERILCNY VFSSSVNIRD SCFSEISNDG ALTLFLFPEM VMKFKKLSPE KMFRVLDMYE ILCELWVELE SIFTFDSMAV
301: VKAQAMASLS KLGDAIRAML SEFEIAVQKD SSKVVVGGGI HPLTRYVMNY LVFLGDYSGA ISDIIVDYSP MSIQMLSESC YLSPTSGDGD SPSSPIVVRL
401: TWLVLVLLCK LDGKAQLYKD VGLSYLFLAN NLNYVVLKVR ESNLKLLLGS EWISKHEMKV KEYMSKYERT GWSKVVTSIP ENLTIEISPS EVKEYFIKFN
501: SSFEEVYRKQ TSWVIPDPKL RDHIKISLAS KIISIYQAFY EMYQGELDIG TESIVRYAPD DLQNYLSDLF LGASFSDSSM GWSGSYSMSV STSISQIR

Best Arabidopsis Sequence Match ( AT5G59730.1 )
(BLAST)

001: MGKHLFRSSP PPEKPTAHLS LAESAVQECM SNINTVISKW TSPAASSSDD FLFSTNSRRE AEEFVTAVRH LQSTMHRLVS VNPSSEKLIY AQNLMQSAMK
101: LLESEFHRVL KANREYLDPE CVSVRSYRSS RFSTSTTTSV SDSEDESSYE ENADEEHRFS GGDSDAMDDL KMIADCMIST GYAKECVRVY KTVRKSIVDE
201: TLHNLQMERF NLHQVQKMDW EILESKIKTW LKAVKLAVRK LFFGERILAD HVFSSSGLIV ESSFTEITQE GALILFTFPE YASKIKKLTP EKMFRFLDMY
301: EALANLYVEI ESIFYFESAA AVRSQVINSL ARLGDATRLM MTDFESAIQK ETSKTPIIGG GVHPLTRYVM NYLSFLADYS DSIAAIFENW KLSVPTPLPD
401: SLYISGGDEA NPEDLYSSPV SVRIAWVILL TLCKIDGKAQ PYKDVALSYL FLANNLQYVV VKVRSSTLKV LLGDDWVFRH EEKVKLYADK FEKLAWGKVL
501: DLLPEIPTDE ISPEEAKVLV ARFNDEFETS YRKQTSWVIP DPKLRDQIKI TLSQKLMLVC TEFYRMNRFA YGMVGDNEAI SRYTPEDIGN YLSDLYFGSR
601: GSGSVSTAGG SGSGSGSGTG SSSTGKARGG RSSH

Arabidopsis Description

ATEXO70H7AT5g59730/mth12_130 [Source:UniProtKB/TrEMBL;Acc:Q9FN91]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.