Factsheet for PGSC0003DMT400028204

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005280.1.1	Tomato	plastid	93.47	93.31
PGSC0003DMT400040200	Potato	plastid	61.81	61.19
PGSC0003DMT400078145	Potato	mitochondrion	61.47	58.81
VIT_06s0004g04010.t01	Wine grape	plastid	55.78	54.06
KRH29876	Soybean	mitochondrion	50.42	49.43
CDY68540	Canola	plastid	44.72	48.72
CDX88720	Canola	plastid	44.72	48.55
KRH25009	Soybean	mitochondrion	49.92	48.53
CDY60562	Canola	cytosol	44.72	48.28
KRH22988	Soybean	plastid	38.86	48.23
CDX71078	Canola	cytosol, mitochondrion, nucleus, plastid	44.05	47.39
CDY49576	Canola	cytosol	43.72	47.37
KRH22987	Soybean	cytosol, mitochondrion, plastid	44.89	46.77
PGSC0003DMT400061435	Potato	plastid	49.75	46.19
KRH10327	Soybean	plastid	45.73	46.04
PGSC0003DMT400061436	Potato	plastid	49.41	45.88
CDX93621	Canola	cytosol	34.34	45.66
Bra006696.1-P	Field mustard	cytosol	47.24	45.48
Bra020294.1-P	Field mustard	cytosol, plastid	47.24	45.41
AT5G59730.1	Thale cress	cytosol, plastid	47.24	44.48
PGSC0003DMT400061494	Potato	plastid	47.24	44.41
Bra002537.1-P	Field mustard	cytosol, nucleus, plastid	46.57	44.27
AT2G28650.1	Thale cress	plastid	42.38	44.15
CDX80235	Canola	cytosol, nucleus, plastid	45.9	43.77
CDY31722	Canola	mitochondrion, plastid	41.54	42.61
CDY04577	Canola	plastid	38.19	41.99
CDX77195	Canola	mitochondrion, plastid	41.04	41.95
Bra035682.1-P	Field mustard	mitochondrion, plastid	41.71	41.5
GSMUA_Achr10P...	Banana	cytosol	31.32	41.46
AT2G28640.1	Thale cress	mitochondrion	41.88	41.32
CDX95128	Canola	cytosol, nucleus, plastid	39.87	40.96
CDY60968	Canola	cytosol	7.2	40.95
PGSC0003DMT400060448	Potato	plastid	44.39	40.9
Bra018685.1-P	Field mustard	cytosol, nucleus, plastid	39.53	40.83
GSMUA_AchrUn_...	Banana	cytosol	38.69	40.38
CDY60967	Canola	plastid	25.63	39.95
GSMUA_Achr6P34400_001	Banana	mitochondrion	39.03	38.58
AT1G07725.1	Thale cress	cytosol, nucleus, plastid	39.36	38.21
GSMUA_Achr10P...	Banana	mitochondrion	39.2	38.05
GSMUA_Achr7P15340_001	Banana	mitochondrion	38.19	37.38
PGSC0003DMT400012539	Potato	extracellular	28.48	28.52
PGSC0003DMT400058947	Potato	cytosol	28.98	28.45
PGSC0003DMT400043775	Potato	cytosol	26.97	28.15
PGSC0003DMT400003687	Potato	nucleus	30.82	27.96
PGSC0003DMT400065456	Potato	cytosol	28.14	26.79
PGSC0003DMT400032221	Potato	nucleus	28.81	26.02
PGSC0003DMT400072333	Potato	cytosol	27.81	25.94
PGSC0003DMT400090181	Potato	cytosol	28.64	25.64
PGSC0003DMT400006075	Potato	cytosol	23.95	24.16
PGSC0003DMT400063083	Potato	cytosol	24.62	23.15
PGSC0003DMT400013431	Potato	nucleus	24.62	22.14
PGSC0003DMT400052043	Potato	nucleus	25.29	21.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400028204	EnsemblPlantsGene:PGSC0003DMG400010879	Gene3D:1.20.1280.170	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987
InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	PANTHER:PTHR12542	PANTHER:PTHR12542:SF17	PFAM:PF03081	PGSC:PGSC0003DMG400010879
SEG:seg	SUPFAM:SSF74788	UniParc:UPI00029616F3	UniProt:M1AQU2	MapMan:22.6.3.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010879]

Coordinates

chr6:-:6082334..6084127

Molecular Weight (calculated)

67321.9 Da

IEP (calculated)

6.336

GRAVY (calculated)

-0.081

Length

597 amino acids

Sequence
(BLAST)

001: MKTPFFSSSK SSSHNYSSSS TSFCESLMEE TIQNSQSIIK KWDLDSTSTS YNRVANLFRD NPLDAKRLLE SVNDLQHAMQ FVIKDKSTSK LLVRAHNLIQ
101: IAIKRLQKEF YTILSGSSYF LDHETVSSSR ASKSSMEDEV SESVMADLKA IADCMIGAGY GRECVKLYKV NRKSVIDETL FYLGIEKLNS YQVQKMDWEL
201: MEMKIKNWLS SVKIAVNALF RGERILCDYV FSSSVNIRDS CFSEIANDGA LTLFVFPEMV MKFKKLSPEK MFRVLDIYEI ICELWVELES IFTFDSMAVV
301: KAQAMASLGK LGDAIRAMLS AFETAVQKDS SKVVLGGGIH PLTRYVMNFL VFLGDYSGAI SDIVVDCSPM SIQMLSESCY LSPTSGDGDS PSSPIVVRLT
401: WLVLVLLCKL DGKAQLYKDV GLSYLFLANN LNYVVLKVRE SNLKLLLGSE WISKHEMKVK EYMSKYERTG WSKVVTSIPE NLTTEMSSSE VKECFIKFNS
501: SFEEVYRKQS SWVIPDPKLR DHVKISLASK IISIYQAFYE TYRGELDIGT ESIVRFAPDD LQNYLSDLFH GACFSDSSMG WSGSYSPSVS TSTSQGR

Best Arabidopsis Sequence Match ( AT5G59730.1 )
(BLAST)

001: MGKHLFRSSP PPEKPTAHLS LAESAVQECM SNINTVISKW TSPAASSSDD FLFSTNSRRE AEEFVTAVRH LQSTMHRLVS VNPSSEKLIY AQNLMQSAMK
101: LLESEFHRVL KANREYLDPE CVSVRSYRSS RFSTSTTTSV SDSEDESSYE ENADEEHRFS GGDSDAMDDL KMIADCMIST GYAKECVRVY KTVRKSIVDE
201: TLHNLQMERF NLHQVQKMDW EILESKIKTW LKAVKLAVRK LFFGERILAD HVFSSSGLIV ESSFTEITQE GALILFTFPE YASKIKKLTP EKMFRFLDMY
301: EALANLYVEI ESIFYFESAA AVRSQVINSL ARLGDATRLM MTDFESAIQK ETSKTPIIGG GVHPLTRYVM NYLSFLADYS DSIAAIFENW KLSVPTPLPD
401: SLYISGGDEA NPEDLYSSPV SVRIAWVILL TLCKIDGKAQ PYKDVALSYL FLANNLQYVV VKVRSSTLKV LLGDDWVFRH EEKVKLYADK FEKLAWGKVL
501: DLLPEIPTDE ISPEEAKVLV ARFNDEFETS YRKQTSWVIP DPKLRDQIKI TLSQKLMLVC TEFYRMNRFA YGMVGDNEAI SRYTPEDIGN YLSDLYFGSR
601: GSGSVSTAGG SGSGSGSGTG SSSTGKARGG RSSH

Arabidopsis Description

ATEXO70H7AT5g59730/mth12_130 [Source:UniProtKB/TrEMBL;Acc:Q9FN91]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.