Factsheet for PGSC0003DMT400078145

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075610.1.1	Tomato	plastid	93.91	94.06
PGSC0003DMT400040200	Potato	plastid	60.74	62.85
PGSC0003DMT400028204	Potato	plastid	58.81	61.47
VIT_06s0004g04010.t01	Wine grape	plastid	54.17	54.87
KRH29876	Soybean	mitochondrion	49.84	51.07
KRH25009	Soybean	mitochondrion	49.52	50.33
KRH22988	Soybean	plastid	37.82	49.06
CDX93621	Canola	cytosol	34.62	48.11
KRH22987	Soybean	cytosol, mitochondrion, plastid	43.91	47.82
CDY60562	Canola	cytosol	41.99	47.38
CDX88720	Canola	plastid	41.67	47.27
CDY68540	Canola	plastid	41.51	47.26
KRH10327	Soybean	plastid	44.55	46.88
CDX71078	Canola	cytosol, mitochondrion, nucleus, plastid	41.67	46.85
CDY49576	Canola	cytosol	41.35	46.82
AT2G28650.1	Thale cress	plastid	42.63	46.42
PGSC0003DMT400061435	Potato	plastid	47.6	46.19
PGSC0003DMT400061436	Potato	plastid	47.12	45.72
Bra006696.1-P	Field mustard	cytosol	45.19	45.48
PGSC0003DMT400061494	Potato	plastid	46.15	45.35
Bra020294.1-P	Field mustard	cytosol, plastid	44.71	44.93
CDY04577	Canola	plastid	38.94	44.75
Bra002537.1-P	Field mustard	cytosol, nucleus, plastid	45.03	44.75
AT5G59730.1	Thale cress	cytosol, plastid	45.35	44.64
CDX80235	Canola	cytosol, nucleus, plastid	44.55	44.41
CDY60967	Canola	plastid	27.24	44.39
GSMUA_AchrUn_...	Banana	cytosol	40.54	44.23
CDX95128	Canola	cytosol, nucleus, plastid	40.87	43.89
Bra018685.1-P	Field mustard	cytosol, nucleus, plastid	40.38	43.6
CDY60968	Canola	cytosol	7.21	42.86
GSMUA_Achr10P...	Banana	cytosol	30.93	42.79
AT2G28640.1	Thale cress	mitochondrion	41.19	42.48
CDY31722	Canola	mitochondrion, plastid	39.26	42.1
Bra035682.1-P	Field mustard	mitochondrion, plastid	39.9	41.5
CDX77195	Canola	mitochondrion, plastid	38.78	41.44
PGSC0003DMT400060448	Potato	plastid	42.47	40.9
AT1G07725.1	Thale cress	cytosol, nucleus, plastid	40.22	40.81
GSMUA_Achr7P15340_001	Banana	mitochondrion	39.1	40.0
GSMUA_Achr10P...	Banana	mitochondrion	39.26	39.84
GSMUA_Achr6P34400_001	Banana	mitochondrion	36.86	38.08
PGSC0003DMT400012539	Potato	extracellular	29.01	30.37
PGSC0003DMT400058947	Potato	cytosol	29.33	30.1
PGSC0003DMT400043775	Potato	cytosol	25.16	27.45
PGSC0003DMT400090181	Potato	cytosol	29.33	27.44
PGSC0003DMT400003687	Potato	nucleus	28.04	26.6
PGSC0003DMT400065456	Potato	cytosol	26.6	26.48
PGSC0003DMT400032221	Potato	nucleus	27.88	26.32
PGSC0003DMT400072333	Potato	cytosol	26.76	26.09
PGSC0003DMT400006075	Potato	cytosol	23.88	25.17
PGSC0003DMT400013431	Potato	nucleus	24.2	22.74
PGSC0003DMT400063083	Potato	cytosol	23.08	22.68
PGSC0003DMT400052043	Potato	nucleus	23.08	20.63

Protein Annotations

Gene3D:1.20.1280.170	EntrezGene:102586391	MapMan:22.6.3.1	InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	GO:GO:0000145
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887
GO:GO:0008150	GO:GO:0009987	UniProt:M1CZG7	PFAM:PF03081	EnsemblPlantsGene:PGSC0003DMG400030394	PGSC:PGSC0003DMG400030394
EnsemblPlants:PGSC0003DMT400078145	PANTHER:PTHR12542	PANTHER:PTHR12542:SF17	SUPFAM:SSF74788	UniParc:UPI000295D4DF	RefSeq:XP_006350742.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030394]

Coordinates

chr6:-:56289933..56292272

Molecular Weight (calculated)

70083.3 Da

IEP (calculated)

5.362

GRAVY (calculated)

-0.236

Length

624 amino acids

Sequence
(BLAST)

001: MTGFFSLSKH SSPLHASSQS THHKFSDTLM EDTLKNAEEI IKRWDLDESS SNLFQDNRTE AKQFLDAVID LQHAMQFVVK ESSTSQLLVR AQNLMKIAMK
101: RLQKEFYTIL AGNRYFLDSE SGSRESTRYS GSDEDQGSED DNAEIEARFA EISITDEGEK VSVAVDLKAI ADCMIEAGYG KECSKIYELN RKSVIEETLY
201: YLGVENICPS TVQKMDWKDL EKKIKIWLNA VKVAVSTLFY GERILCDQVF SISDSIRESC FTGIAKDSAL TLFTFPEMVA KYKKLSLEKM FRILDLYDSI
301: SELLSEIEVI FGFDSTVAVK SQALTSMAKL RDAARAMLAE FESAIKKDSS KVVAGGGIHP LTRYVMNYLI FLSDYSGPVS DIIADWKAVV KSPLPESYLL
401: SPIADDGESP SCIVSVRLTW LILVLLCKLD GKAGFYGDVP LSYLFLANNL NYVVSKVRQS SLKLLLGPDW LSNHESKVEQ YMANFKRMGW SSVMTSLPEN
501: STAEISPAEA KECFCKFSLS FEETYWKQRS WVIPDPKLRD EVKISLAKKI LSAYRPFYHK YGEKVAWMES GGGVESILRF APDNVQNYLS DLFHGSSENS
601: STTSSSHGSS SRSTPTWSSP PQGR

Best Arabidopsis Sequence Match ( AT5G59730.2 )
(BLAST)

001: MGKHLFRSSP PPEKPTAHLS LAESAVQECM SNINTVISKW TSPAASSSDD FLFSTNSRRE AEEFVTAVRH LQSTMHRLVS VNPSSEKLIY AQNLMQSAMK
101: LLESEFHRVL KANREYLDPE CVSVRSYRSS RFSTSTTTSV SDSEDESSYE ENADEEHRFS GGDSDAMDDL KMIADCMIST GYAKECVRVY KTVRKSIVDE
201: TLHNLQMERF NLHQVQKMDW EILESKIKTW LKAVKLAVRK LFFGERILAD HVFSSSGLIV ESSFTEITQE GALILFTFPE YASKIKKLTP EKMFRFLDMY
301: EALANLYVEI ESIFYFESAA AVRSQVINSL ARLGDATRLM MTDFESAIQK ETSKTPIIGG GVHPLTRYVM NYLSFLADYS DSIAAIFENW KLSVPTPLPD
401: SLYISGGDEA NPEDLYSSPV SVRIAWVILL TLCKIDGKAQ PYKDVALSYL FLANNLQYVV VKVRSSTLKV LLGDDWVFRH EEKVKLYADK FEKLAWGKVL
501: DLLPEIPTDE ISPEEAKVLV ARFNDEFETS YRKQTSWVIP DPKLRDQIKI TLSQKLMLVC TEFYRMNRFA YGMVGDNEAI SRYTPEDIGN YLSDLYFGSR
601: GSGSVSTAGG SGSGSGSGTV RVKLVADVVV IE

Arabidopsis Description

ATEXO70H7AT5g59730/mth12_130 [Source:UniProtKB/TrEMBL;Acc:Q9FN91]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.