Factsheet for PGSC0003DMT400065456

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035019
PGSC0003DMT400035020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07000.1	PGSC0003DMT400035019	AT1G29640.1	21798944
AT1G07000.1	PGSC0003DMT400035020	AT1G29640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066070.1.1	Tomato	cytosol	95.85	95.25
VIT_06s0004g07440.t01	Wine grape	cytosol	67.3	67.3
CDY70944	Canola	cytosol	45.14	66.75
CDY02822	Canola	cytosol	30.62	66.67
Bra020368.1-P	Field mustard	cytosol	50.4	66.11
AT5G58430.1	Thale cress	cytosol	65.23	65.54
CDY60022	Canola	cytosol	63.8	64.72
Bra006767.1-P	Field mustard	cytosol	63.64	64.56
KRH17115	Soybean	cytosol	66.19	64.44
KRH72760	Soybean	cytosol	65.39	64.06
CDY02823	Canola	cytosol	22.17	55.82
AT1G07000.1	Thale cress	cytosol	52.15	54.59
CDY10240	Canola	cytosol	51.52	54.1
Bra015543.1-P	Field mustard	cytosol	51.36	53.94
CDY06667	Canola	cytosol	51.04	53.6
GSMUA_Achr10P...	Banana	cytosol	48.33	49.92
OQU87774	Sorghum	cytosol	47.37	45.98
TraesCS3D01G341800.1	Wheat	cytosol	47.05	45.74
Os01t0827500-01	Rice	plasma membrane	47.37	45.55
TraesCS3A01G348200.1	Wheat	cytosol	47.05	45.52
TraesCS3B01G380100.1	Wheat	cytosol	47.05	45.38
TraesCS1B01G307200.1	Wheat	cytosol	46.25	44.41
TraesCS1A01G297800.1	Wheat	cytosol	46.25	44.34
TraesCS1D01G293400.1	Wheat	cytosol	46.09	44.19
Os05t0473500-01	Rice	plastid	41.15	43.36
Zm00001d038447_P001	Maize	plastid	39.87	43.03
EES19684	Sorghum	cytosol	45.45	42.73
HORVU3Hr1G088110.3	Barley	cytosol, plastid	47.05	42.51
Zm00001d010602_P001	Maize	extracellular, mitochondrion, plasma membrane	44.82	42.45
HORVU1Hr1G070390.1	Barley	cytosol, mitochondrion	46.09	41.76
EES01688	Sorghum	cytosol	32.06	37.71
Os01t0827600-01	Rice	cytosol	32.54	36.89
PGSC0003DMT400012539	Potato	extracellular	33.01	34.73
PGSC0003DMT400058947	Potato	cytosol	33.49	34.54
PGSC0003DMT400090181	Potato	cytosol	36.04	33.88
PGSC0003DMT400043775	Potato	cytosol	30.46	33.39
PGSC0003DMT400006075	Potato	cytosol	30.94	32.77
PGSC0003DMT400003687	Potato	nucleus	32.85	31.31
PGSC0003DMT400052043	Potato	nucleus	34.45	30.95
PGSC0003DMT400013431	Potato	nucleus	32.38	30.57
PGSC0003DMT400032221	Potato	nucleus	31.9	30.26
PGSC0003DMT400072333	Potato	cytosol	30.46	29.84
PGSC0003DMT400028204	Potato	plastid	26.79	28.14
PGSC0003DMT400061494	Potato	plastid	27.91	27.56
PGSC0003DMT400061436	Potato	plastid	28.07	27.37
PGSC0003DMT400061435	Potato	plastid	28.07	27.37
PGSC0003DMT400063083	Potato	cytosol	27.59	27.24
PGSC0003DMT400078145	Potato	mitochondrion	26.48	26.6
PGSC0003DMT400040200	Potato	plastid	24.4	25.37
PGSC0003DMT400060448	Potato	plastid	25.36	24.54
Zm00001d043015_P001	Maize	mitochondrion	41.15	23.93

Protein Annotations

Gene3D:1.20.1280.170	EntrezGene:102595914	MapMan:22.6.3.1	InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	GO:GO:0000145
GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0006887	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009414	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628
GO:GO:0009719	GO:GO:0009789	GO:GO:0009987	GO:GO:0016020	GO:GO:0042742	GO:GO:0050832
GO:GO:0070062	GO:GO:0090333	UniProt:M1CE10	PFAM:PF03081	EnsemblPlantsGene:PGSC0003DMG400025456	PGSC:PGSC0003DMG400025456
EnsemblPlants:PGSC0003DMT400065456	PANTHER:PTHR12542	PANTHER:PTHR12542:SF29	SUPFAM:SSF74788	UniParc:UPI000294A944	RefSeq:XP_006355297.1
SEG:seg	:	:	:	:	:

Description

L.esculentum protein with leucine zipper [Source:PGSC_GENE;Acc:PGSC0003DMG400025456]

Coordinates

chr8:-:37580100..37582464

Molecular Weight (calculated)

71408.5 Da

IEP (calculated)

5.045

GRAVY (calculated)

-0.393

Length

627 amino acids

Sequence
(BLAST)

001: MAENGEEKLI AVARHIAKTL GHTDTMTDDI LQIFSNFDNR FREKLTDDQP LERTLKSLHR QISRHLSAQH HIWSDSAESA AFLDSVDQLL AVIHEWNPMA
101: NDKSVSVSLD KADDLLQQAM FRLQEEFTTL MQRASESVDL TRHQNGGNNL GDYYESEEED DDDDDDDSGE IPIAHPVTDY GILIEALPAG IISDLHEIAK
201: RMVAAGYEKE CSHAYSVSRR EFLEESLSRL GLQKLSMDQV QKMQWNELED EIEKWVKAVN VALRILFPSE RRLCDRVFFG FNSVSDLSFM EVSRGSTIQL
301: LNFADAVAIS SRAPERLFKV LDVYEALRDL MPEFELMFSD QYCVLLRNEA LAIWRRLGEA IRGIFMELEN LIRRDPAKTP VPGGGLHPIT RYVMNYIRAA
401: CRSRITLEQV FEEIVVPSAS AVDYRDGDDR ALSSSSLAVQ MAWIMELLES NLEAKSKIYK DSALLAVFMM NNERYIVQKV NDSELGLLLG DDWIRKHAAK
501: VKQYHVSYHR SSWSKVSGVL KIDNNAMSPT GASRSLKEKL KLFNSYFEEI CKTQSTWIIF DEQLKEELRN SVARSLSPAY HNFIGRLQSN NDSGRHAERH
601: IKFSVEDLEA RISELFQGSS GSGGGRK

Best Arabidopsis Sequence Match ( AT5G58430.1 )
(BLAST)

001: MAENGEEKLL AVARHIAKTL GHNESMADDI LQIFSNFDGR FSREKLAEGQ AGEDGSGVAT LERALNSIDG QISRFVAADQ PIWADPADSA AFLDTIDELV
101: AIIREWSPMA SEKPIGICLT RADDMMQQAM FRIEEEFRSL MERGAESFGL NPQGDAGAMN HRFDSEEEED DDRDFNNGDD IQIPVAQPLT DYDLIIDALP
201: SATINDLHEM AKRMLGAGFG KACSHVYSSC RREFLEESMS RLGLQKLSIE EVHKMPWQEL EDEIDRWIKA ANVALRILFP SERRLCDRVF FGFSSAADLS
301: FMEVCRGSTI QLLNFADAIA IGSRSPERLF KVLDVFETMR DLMPEFESVF SDQFCSVLRN EAVTIWKRLG EAIRGIFMEL ENLIRRDPAK AAVPGGGLHP
401: ITRYVMNYLR AACRSRQTLE QVFEESNGVP SKDSTLLTVQ MSWIMELLES NLEVKSKVYK DPALCYVFLM NNGRYIVQKV KDGDLGLLLG DDWIRKHNVK
501: VKQYHMNYQR SSWNKMLGLL KVDNTAAGMN GLGKTMKEKL KQFNIQFDEI CKVHSTWVVF DEQLKEELKI SLARLLVPAY GSFIGRFQNL GDIGKNADKY
601: IKYGVEDIEA RINELFKGTT TGRK

Arabidopsis Description

EXO70B1Exocyst complex component EXO70B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.