CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88720	Canola	plastid	96.22	97.09
CDY49576	Canola	cytosol	84.5	85.12
CDY68540	Canola	plastid	82.52	83.58
CDY60562	Canola	cytosol	83.24	83.54
CDX80235	Canola	cytosol, nucleus, plastid	84.5	74.92
AT5G59730.1	Thale cress	cytosol, plastid	82.88	72.56
CDY60968	Canola	cytosol	9.91	52.38
VIT_06s0004g04010.t01	Wine grape	plastid	51.71	46.59
CDY04577	Canola	plastid	45.41	46.41
CDX93621	Canola	cytosol	36.94	45.66
Solyc06g005280.1.1	Tomato	plastid	48.29	44.82
KRH29876	Soybean	mitochondrion	48.47	44.17
Solyc11g073010.1.1	Tomato	plastid	50.45	44.16
PGSC0003DMT400028204	Potato	plastid	47.39	44.05
KRH10327	Soybean	plastid	47.03	44.01
KRH25009	Soybean	mitochondrion	48.65	43.97
KRH22987	Soybean	cytosol, mitochondrion, plastid	45.23	43.8
KRH22988	Soybean	plastid	37.66	43.45
CDY60967	Canola	plastid	29.55	42.82
CDY31722	Canola	mitochondrion, plastid	44.68	42.61
CDX95128	Canola	cytosol, nucleus, plastid	44.5	42.51
PGSC0003DMT400040200	Potato	plastid	46.13	42.45
Solyc06g075610.1.1	Tomato	plastid	47.03	41.89
PGSC0003DMT400078145	Potato	mitochondrion	46.85	41.67
CDX77195	Canola	mitochondrion, plastid	43.78	41.61
GSMUA_AchrUn_...	Banana	cytosol	42.34	41.08
GSMUA_Achr10P...	Banana	cytosol	33.33	41.02
CDY07003	Canola	cytosol, golgi, mitochondrion, plastid	27.93	39.14
CDY44712	Canola	cytosol	42.88	38.76
CDY41604	Canola	cytosol	43.06	38.61
CDY41297	Canola	mitochondrion	41.8	38.16
GSMUA_Achr6P34400_001	Banana	mitochondrion	40.72	37.42
CDX74849	Canola	plastid	41.26	36.41
GSMUA_Achr7P15340_001	Banana	mitochondrion	39.82	36.23
GSMUA_Achr10P...	Banana	mitochondrion	40.0	36.1
CDY28574	Canola	cytosol	17.48	35.93
CDY64629	Canola	plastid	41.62	35.93
CDY02484	Canola	cytosol	19.46	35.76
CDX76117	Canola	plastid	40.72	35.7
CDX73400	Canola	plastid	40.18	35.57
CDX74848	Canola	plastid	38.92	35.41
CDY64627	Canola	plastid	41.08	35.29
CDY40204	Canola	plastid	39.64	35.26
CDY44645	Canola	plastid	40.9	35.25
CDX73983	Canola	mitochondrion	39.28	35.16
CDY02916	Canola	plastid	40.0	35.07
CDY07931	Canola	cytosol	38.92	34.5
CDX93267	Canola	plastid	36.94	34.17
CDX74850	Canola	plastid	41.26	33.98
CDY44646	Canola	cytosol	39.82	31.66
CDY02822	Canola	cytosol	16.4	31.6
CDY50639	Canola	cytosol	31.17	28.41
CDX68265	Canola	cytosol	30.99	28.24
CDY10372	Canola	cytosol	15.14	28.0
CDX71629	Canola	cytosol	32.97	27.4
CDY05812	Canola	cytosol, plastid	32.97	27.31
CDX69666	Canola	cytosol	9.01	26.45
CDX97230	Canola	cytosol	9.01	26.45
CDX97543	Canola	cytoskeleton, cytosol, nucleus	28.47	25.57
CDY61474	Canola	cytosol	23.06	25.2
CDY04082	Canola	cytosol	25.77	24.96
CDY44387	Canola	cytosol	25.59	24.83
CDY52262	Canola	cytoskeleton, cytosol, nucleus	28.65	24.61
CDY60022	Canola	cytosol	27.21	24.43
CDY02176	Canola	cytosol	24.14	24.36
CDX70300	Canola	cytosol	27.39	24.05
CDX91635	Canola	cytosol	27.21	23.89
CDY27076	Canola	cytosol	27.21	23.89
CDY10374	Canola	cytosol	27.39	23.82
CDY44373	Canola	cytosol	24.14	23.8
CDY06667	Canola	cytosol	25.41	23.62
CDY10240	Canola	cytosol	25.23	23.45
CDX85273	Canola	cytosol	27.39	23.38
CDX86365	Canola	cytosol	26.85	23.03
CDX78509	Canola	nucleus	25.05	22.17
CDY69943	Canola	cytosol	24.68	21.85
CDY70944	Canola	cytosol	16.4	21.46
CDX78551	Canola	nucleus	26.13	21.29
CDX70532	Canola	nucleus	26.13	21.26
CDX85618	Canola	nucleus	26.67	21.2
CDX69615	Canola	cytosol, nucleus, plastid	25.95	21.02
CDY09840	Canola	cytosol, nucleus, plastid	25.95	20.99
CDX91088	Canola	cytosol, nucleus, vacuole	25.05	18.01
CDY23090	Canola	nucleus	24.5	14.5
CDY02823	Canola	cytosol	5.77	12.85

Protein Annotations

Gene3D:1.20.1280.170	MapMan:22.6.3.1	GO:A0A078C7W1	EnsemblPlants:CDX71078	ProteinID:CDX71078	ProteinID:CDX71078.1
InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00141029001
PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF17	SUPFAM:SSF74788	UniParc:UPI0004EF4757	SEG:seg

Description

BnaC03g11620D

Coordinates

chrLK031791:+:3569818..3571686

Molecular Weight (calculated)

62292.3 Da

IEP (calculated)

7.401

GRAVY (calculated)

-0.221

Length

555 amino acids

Sequence
(BLAST)

001: MGKHLFRSSP PQEKQPAHQT LAESAVQECM SKINRVTSKW TSPSPSSDAH LFSTNSRREA EEFAEAVRHL HSTMHRLAAV NPSSEKLVYA QNLMQSAMNL
101: LESEFHRVFS GGDSDAMDDL KMIADCMIST GYAKECVKVY KTVRRSIVDE TLHGLAVERF TLHQVQKMDW DTLESKIRTW LPAVKLAVRS LFFGERLLAD
201: HVFSSSLNIV ESSFTDITQE GALTLFTFPE NAAKIKKLSP EKMFRFLDMY ESLASLFVEI ESIFYFDSAA AVRAQVINSL AKLGDAARLM MTDFETAIQK
301: ETSRTPVVGG GVHPLTRYVM NYLSFLADYD ESIAVIFENW QLYSSPVSVR IAWVILLTLC KIDGKAQPYK DVALSYLFLA NNLQYVVVKV RSSSGLKVLL
401: GEDWVVRHEG KVKQYAEKFQ KLAWGKVLTS LPEYPKEEIA PEEARELFGR FNDEFEAAYR RQMSWVVPDP KLRDWIKISL SGKLVPVCSE FYEVNRFGLG
501: GDGFNVRYTP EDIGNYLSDL YFGSRGSGSV STKGSGSGSG TGSSTTVKSR GGRSH

Best Arabidopsis Sequence Match ( AT5G59730.1 )
(BLAST)

001: MGKHLFRSSP PPEKPTAHLS LAESAVQECM SNINTVISKW TSPAASSSDD FLFSTNSRRE AEEFVTAVRH LQSTMHRLVS VNPSSEKLIY AQNLMQSAMK
101: LLESEFHRVL KANREYLDPE CVSVRSYRSS RFSTSTTTSV SDSEDESSYE ENADEEHRFS GGDSDAMDDL KMIADCMIST GYAKECVRVY KTVRKSIVDE
201: TLHNLQMERF NLHQVQKMDW EILESKIKTW LKAVKLAVRK LFFGERILAD HVFSSSGLIV ESSFTEITQE GALILFTFPE YASKIKKLTP EKMFRFLDMY
301: EALANLYVEI ESIFYFESAA AVRSQVINSL ARLGDATRLM MTDFESAIQK ETSKTPIIGG GVHPLTRYVM NYLSFLADYS DSIAAIFENW KLSVPTPLPD
401: SLYISGGDEA NPEDLYSSPV SVRIAWVILL TLCKIDGKAQ PYKDVALSYL FLANNLQYVV VKVRSSTLKV LLGDDWVFRH EEKVKLYADK FEKLAWGKVL
501: DLLPEIPTDE ISPEEAKVLV ARFNDEFETS YRKQTSWVIP DPKLRDQIKI TLSQKLMLVC TEFYRMNRFA YGMVGDNEAI SRYTPEDIGN YLSDLYFGSR
601: GSGSVSTAGG SGSGSGSGTG SSSTGKARGG RSSH

Arabidopsis Description

ATEXO70H7AT5g59730/mth12_130 [Source:UniProtKB/TrEMBL;Acc:Q9FN91]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.