CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70996
CDX71689
CDX72151
CDX81662
CDX83145
CDX87863
CDX88802
CDX92367
CDY02176
CDY22876
CDY23090
CDY27228
CDY32642
CDY33749
CDY33844
CDY34012
CDY38850
CDY46538
CDY53439
CDY67997
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55150.1	CDX81662	AT1G14687.1	21798944
AT3G55150.1	CDY33749	AT1G14687.1	21798944
AT3G55150.1	CDX87863	AT1G51950.1	21798944
AT3G55150.1	CDY22876	AT1G51950.1	21798944
AT3G55150.1	CDY33844	AT1G51950.1	21798944
AT3G55150.1	CDY46538	AT1G51950.1	21798944
AT3G55150.1	CDY53439	AT1G51950.1	21798944
AT3G55150.1	CDX72151	AT3G56270.1	21798944
AT3G55150.1	CDY27228	AT3G56270.1	21798944
AT3G55150.1	CDX83145	AT4G08150.1	21798944
AT3G55150.1	CDY34012	AT4G08150.1	21798944
AT3G55150.1	CDY68624	AT4G08150.1	21798944
AT3G55150.1	CDX70996	AT5G22310.1	21798944
AT3G55150.1	CDX88802	AT5G22310.1	21798944
AT3G55150.1	CDX92367	AT5G22310.1	21798944
AT3G55150.1	CDY67997	AT5G22310.1	21798944
AT3G55150.1	CDX71689	AT5G51110.1	21798944
AT3G55150.1	CDY32642	AT5G51110.1	21798944
AT3G55150.1	CDY38850	AT5G51110.1	21798944
AT3G55150.1	CDY02176	AT5G61010.1	21798944
AT3G55150.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40204	Canola	plastid	96.33	96.79
CDY02916	Canola	plastid	87.24	86.41
CDX76117	Canola	plastid	87.24	86.41
AT3G55150.1	Thale cress	plastid	84.85	83.65
CDX93267	Canola	plastid	64.59	67.5
CDX74849	Canola	plastid	67.62	67.41
CDY07003	Canola	cytosol, golgi, mitochondrion, plastid	42.42	67.17
CDY44645	Canola	plastid	68.42	66.61
CDY64629	Canola	plastid	67.94	66.25
CDX74848	Canola	plastid	64.43	66.23
CDY64627	Canola	plastid	68.1	66.1
CDX74850	Canola	plastid	68.58	63.8
CDY44646	Canola	cytosol	62.68	56.3
VIT_00s0317g00140.t01	Wine grape	plastid	53.43	53.86
PGSC0003DMT400060448	Potato	plastid	47.85	46.3
Solyc05g054820.1.1	Tomato	plastid	46.09	44.81
CDY44712	Canola	cytosol	43.06	43.97
CDY41604	Canola	cytosol	43.06	43.62
CDY41297	Canola	mitochondrion	41.95	43.26
CDX93621	Canola	cytosol	30.94	43.21
CDY60968	Canola	cytosol	7.18	42.86
GSMUA_AchrUn_...	Banana	cytosol	38.76	42.48
GSMUA_Achr10P...	Banana	mitochondrion	40.19	40.98
CDX73983	Canola	mitochondrion	40.51	40.97
CDX88720	Canola	plastid	35.89	40.91
CDY07931	Canola	cytosol	40.83	40.89
CDY04577	Canola	plastid	34.93	40.33
CDY49576	Canola	cytosol	35.41	40.29
CDX71078	Canola	cytosol, mitochondrion, nucleus, plastid	35.57	40.18
CDY68540	Canola	plastid	35.09	40.15
CDX95128	Canola	cytosol, nucleus, plastid	36.84	39.76
CDY60562	Canola	cytosol	34.93	39.6
GSMUA_Achr7P15340_001	Banana	mitochondrion	38.28	39.34
CDY31722	Canola	mitochondrion, plastid	36.2	39.0
CDX77195	Canola	mitochondrion, plastid	35.73	38.36
CDX80235	Canola	cytosol, nucleus, plastid	37.64	37.7
CDY60967	Canola	plastid	22.65	37.08
GSMUA_Achr10P...	Banana	cytosol	26.48	36.81
GSMUA_Achr6P34400_001	Banana	mitochondrion	35.41	36.76
CDY28574	Canola	cytosol	13.24	30.74
CDY02484	Canola	cytosol	14.35	29.8
CDX69666	Canola	cytosol	8.77	29.1
CDX97230	Canola	cytosol	8.77	29.1
CDX68265	Canola	cytosol	28.07	28.9
CDY50639	Canola	cytosol	27.91	28.74
CDX97543	Canola	cytoskeleton, cytosol, nucleus	26.79	27.18
CDY02822	Canola	cytosol	12.28	26.74
CDY52262	Canola	cytoskeleton, cytosol, nucleus	26.95	26.16
CDX71629	Canola	cytosol	27.75	26.05
CDY05812	Canola	cytosol, plastid	27.75	25.97
CDY04082	Canola	cytosol	22.97	25.13
CDY44387	Canola	cytosol	22.81	25.0
CDY61474	Canola	cytosol	20.26	25.0
CDY06667	Canola	cytosol	23.6	24.79
CDY10240	Canola	cytosol	23.45	24.62
CDY02176	Canola	cytosol	21.37	24.36
CDY27076	Canola	cytosol	23.92	23.73
CDX91635	Canola	cytosol	23.92	23.73
CDY10372	Canola	cytosol	11.32	23.67
CDX70300	Canola	cytosol	23.29	23.1
CDY10374	Canola	cytosol	23.45	23.04
CDX86365	Canola	cytosol	23.45	22.72
CDX85273	Canola	cytosol	22.81	22.0
CDX78509	Canola	nucleus	21.69	21.69
CDY44373	Canola	cytosol	19.46	21.67
CDY60022	Canola	cytosol	21.21	21.52
CDY69943	Canola	cytosol	21.37	21.37
CDX69615	Canola	cytosol, nucleus, plastid	21.85	20.0
CDX70532	Canola	nucleus	21.69	19.94
CDY09840	Canola	cytosol, nucleus, plastid	21.69	19.83
CDX78551	Canola	nucleus	21.37	19.68
CDX85618	Canola	nucleus	21.37	19.2
CDY70944	Canola	cytosol	12.28	18.16
CDX91088	Canola	cytosol, nucleus, vacuole	20.73	16.84
CDY23090	Canola	nucleus	21.85	14.61
CDY02823	Canola	cytosol	5.58	14.06

Protein Annotations

Gene3D:1.20.1280.170	MapMan:22.6.3.1	GO:A0A078C9A7	EnsemblPlants:CDX73400	ProteinID:CDX73400	ProteinID:CDX73400.1
InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00108882001
PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF26	SUPFAM:SSF74788	UniParc:UPI0004EDBB7E	SEG:seg

Description

BnaC08g26030D

Coordinates

chrLK031799:+:157511..159394

Molecular Weight (calculated)

71403.0 Da

IEP (calculated)

6.853

GRAVY (calculated)

-0.337

Length

627 amino acids

Sequence
(BLAST)

001: MEQKSKFSFF SSSSPKSLPS SPHSFTSSPA SPLHQVFTQS TMDEAIARAE AIIKKWDPNT PSFTKIVSLF NHSRKEAKEF IKCVRDLRKA MHFLVSQDSQ
101: SPKLALAQTL MQIAMTRLEK EFFQILSSNR DKLDPESVSG QSSTSTNSEF EDDYDDDEMK KANESITKVE KASAVVMSDL KAIAECMISC GYGKECIKIY
201: KRIRKSIVDE GLSYLGIEAY KSSRLHRTDW VTLDHMIKNW TKAAKIGVTT LFRGEKLLCD HVFSASNSTR ESCFYEIANE AATNLFKFPE FVAKEKKSHE
301: RIFSLMDLQA AISNLWQDIE MIFHYDSVSG VKSQALMSLE KLKVSIHNAL TDFESTVHKD STKALTPGGG IHKLTRSTMS FISSLSENSS VLSEILTDHP
401: LPRNTRLLES YVTMLEEEEH NHALSVHFAW LILVLLCKLD TKAEHYKDVS LSYLFIANNL HFIIETVRSS DHLRHLLGED WITKHDDKLS AYAANYEISA
501: WSYVYMSLPE EPTELSPEEA KIYFIRFHSA FEEAYMKQSS RVVPDAKLRD ELKVSIAKKL VPEYREFYKK YLPMLGQERN IEMLVRFKPD NLENYISDLF
601: HGTQILASSS VSSSSSTSWM SLGRVSS

Best Arabidopsis Sequence Match ( AT3G55150.1 )
(BLAST)

001: MAKMAKFSFF SSSSPKYHPS SPSSFTSFPA SPLNQNFTQA MMEETVETAD SVIRKWDPNT PSFTKIVSLF NHSRKEAKEF IRCVRDLRRA MHFLVSQDSQ
101: SPKLALAQTL MQIAMARLEK EFFQILSSNR DKLDPESVSG QSSISSNSEF EDVMGSDDDD ESDNEMRKAG ESITQVEKAS AMVMSDLKAI AESMISCGYG
201: KECVKIYKRV RKSIVDEGLS LLGIEIYKGS RFHRTDWVTL EHMIKNWIKA AKIGIATLFR GEKLLCDHVF SASNSTRESC FYEIANEAAT NLFKFPEFVA
301: KEKKSHERIF PLMDLQAAIS DLWQDIEMIF HFDAVAGVKS QALTSLQKLK VSIHSALTDF ESIIQKDTTK ALTPGGGIHK LTRSTMNFIS SLSKYSGVLS
401: EILADHPLPR NTRLLESYVR APISEDEQHN HALSVHFAWL ILVLLCKLDT KAEHYKDVSL SYLFLANNLQ IIIETVGSTP LRNLLGDDWL NKHEDKLCAY
501: AGNYEIAAWS NVFMSLPEEP TDLSPEEAKI YFRRFHTAFE EAYMKQSSRV VPNAKLRDEL KVSIAKKLVP EYREFYRKYL PMLGQERNIE ILVRFKPDNL
601: ENYISDLFHG TPIHASSSFS SSSSSSSWKS LGCVSG

Arabidopsis Description

ATEXO70H1Exocyst complex component EXO70H1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.