Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026812.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX81662 | Canola | nucleus | 98.84 | 98.84 |
| AT1G14687.1 | Thale cress | nucleus | 83.72 | 85.71 |
| VIT_01s0011g06360.t01 | Wine grape | nucleus | 37.79 | 36.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078H8D4 | UniProt:A0A078H8D4 | EnsemblPlants:CDY33749 | ProteinID:CDY33749 |
| ProteinID:CDY33749.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00055163001 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 |
| PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF16 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 |
| UniParc:UPI0002542D8E | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : |
Description
BnaA09g45550DBnaA09g45550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8D4]
Coordinates
chrLK032321:-:128123..128677
Molecular Weight (calculated)
20332.0 Da
IEP (calculated)
9.446
GRAVY (calculated)
-1.029
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSSCLYREC MRNHAAKLGS YAVDGCREYS QPSTGDLCAA CGCHRSYHRR IEVQPSGQVT RARFPFTSLR RVKQLARLKW KAAAEDREEQ EEQEEEDTEE
101: TSTEERMTVK RRRKSKFTAE QREAMRDYAA KLGWTLKDKR AVREEISVFC ERIGVTRYLF KTWVNNNKKF YH
101: TSTEERMTVK RRRKSKFTAE QREAMRDYAA KLGWTLKDKR AVREEISVFC ERIGVTRYLF KTWVNNNKKF YH
001: MQSTCVYREC MRNHAAKLGS YAIDGCREYS QPSTGDLCVA CGCHRSYHRR IDVISSPQIN HTRFPFTSLR RVKQLARLKW KTAEERNEEE EDDTEETSTE
101: EKMTVQRRRK SKFTAEQREA MKDYAAKLGW TLKDKRALRE EIRVFCEGIG VTRYHFKTWV NNNKKFYH
101: EKMTVQRRRK SKFTAEQREA MKDYAAKLGW TLKDKRALRE EIRVFCEGIG VTRYHFKTWV NNNKKFYH
Arabidopsis Description
ZHD14ZHD14 [Source:UniProtKB/TrEMBL;Acc:A0A178W745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.