Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024382.1-P | Field mustard | nucleus | 97.95 | 97.95 |
| CDY37827 | Canola | nucleus | 84.64 | 91.18 |
| CDY33960 | Canola | nucleus | 82.59 | 89.96 |
| AT5G65410.1 | Thale cress | nucleus | 84.64 | 88.89 |
| CDY54719 | Canola | nucleus | 73.04 | 88.8 |
| CDX81284 | Canola | nucleus | 75.09 | 86.27 |
| CDY21695 | Canola | mitochondrion | 15.36 | 51.14 |
| GSMUA_Achr7P19060_001 | Banana | nucleus | 35.84 | 50.97 |
| CDX81897 | Canola | mitochondrion | 15.02 | 50.0 |
| CDY08945 | Canola | nucleus | 35.49 | 49.52 |
| Solyc05g051420.1.1 | Tomato | nucleus | 27.99 | 49.1 |
| CDX88950 | Canola | nucleus | 35.15 | 49.05 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 38.57 | 48.92 |
| CDX83807 | Canola | mitochondrion | 14.68 | 48.86 |
| CDY26722 | Canola | mitochondrion | 14.68 | 48.86 |
| CDY19248 | Canola | mitochondrion | 14.68 | 48.86 |
| PGSC0003DMT400084919 | Potato | nucleus | 29.01 | 48.57 |
| CDY03431 | Canola | nucleus | 36.86 | 48.43 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 34.13 | 48.31 |
| CDY24844 | Canola | nucleus | 34.47 | 48.1 |
| CDY34299 | Canola | nucleus | 36.86 | 48.0 |
| GSMUA_Achr10P... | Banana | nucleus | 36.86 | 47.16 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 38.23 | 47.06 |
| CDX96695 | Canola | mitochondrion | 13.99 | 46.59 |
| CDX68172 | Canola | mitochondrion | 15.36 | 46.39 |
| CDX85849 | Canola | mitochondrion | 15.36 | 46.39 |
| VIT_00s0199g00250.t01 | Wine grape | nucleus | 38.23 | 45.9 |
| CDX73105 | Canola | mitochondrion | 14.68 | 45.74 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 22.87 | 45.58 |
| CDX96558 | Canola | mitochondrion | 14.33 | 44.68 |
| KRH74513 | Soybean | nucleus | 37.54 | 43.31 |
| CDX86404 | Canola | mitochondrion | 13.31 | 42.86 |
| CDX85228 | Canola | mitochondrion, nucleus | 13.31 | 42.86 |
| CDX88760 | Canola | nucleus | 25.94 | 41.99 |
| CDY69628 | Canola | nucleus | 25.26 | 41.34 |
| PGSC0003DMT400060623 | Potato | nucleus | 34.13 | 41.15 |
| Zm00001d020774_P001 | Maize | nucleus | 38.23 | 41.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.81 | 40.8 |
| Solyc04g014260.1.1 | Tomato | nucleus | 33.79 | 40.08 |
| CDY20009 | Canola | mitochondrion | 13.31 | 39.8 |
| CDY00105 | Canola | mitochondrion | 13.31 | 39.8 |
| Os09t0466400-01 | Rice | nucleus | 37.88 | 39.78 |
| Os08t0479400-01 | Rice | nucleus | 39.25 | 39.66 |
| Zm00001d005931_P001 | Maize | nucleus | 38.57 | 39.51 |
| CDX73775 | Canola | nucleus | 27.99 | 38.14 |
| EER96888 | Sorghum | nucleus | 39.25 | 38.08 |
| Zm00001d031840_P001 | Maize | nucleus | 39.93 | 37.99 |
| KRH69650 | Soybean | nucleus | 38.23 | 37.97 |
| EES15144 | Sorghum | nucleus | 39.93 | 37.62 |
| CDX77960 | Canola | nucleus | 27.65 | 36.99 |
| CDY37252 | Canola | nucleus | 32.76 | 36.78 |
| CDY62531 | Canola | nucleus | 32.76 | 36.5 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 36.18 | 35.81 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 36.18 | 35.69 |
| HORVU5Hr1G069730.1 | Barley | nucleus | 36.52 | 35.43 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 35.49 | 35.02 |
| CDX95914 | Canola | nucleus | 27.3 | 34.63 |
| CDX90679 | Canola | nucleus | 27.99 | 33.74 |
| CDY45419 | Canola | nucleus | 32.76 | 33.33 |
| CDY01760 | Canola | nucleus | 28.67 | 32.81 |
| CDX85886 | Canola | nucleus | 32.76 | 32.65 |
| CDY28987 | Canola | nucleus | 26.96 | 32.24 |
| CDY28566 | Canola | nucleus | 27.99 | 32.16 |
| CDX73152 | Canola | nucleus | 32.76 | 32.11 |
| CDY44079 | Canola | nucleus | 27.65 | 31.76 |
| CDX68137 | Canola | nucleus | 31.74 | 31.31 |
| CDY09363 | Canola | nucleus | 31.74 | 31.21 |
| CDX69541 | Canola | nucleus | 27.99 | 31.18 |
| CDY70550 | Canola | nucleus | 26.96 | 30.74 |
| CDY41692 | Canola | nucleus | 31.4 | 30.67 |
| CDY20008 | Canola | nucleus | 29.35 | 30.61 |
| CDY53549 | Canola | nucleus | 32.76 | 30.57 |
| CDY45257 | Canola | nucleus | 32.42 | 30.55 |
| CDX81638 | Canola | nucleus | 32.76 | 30.48 |
| CDY70108 | Canola | nucleus | 26.96 | 29.81 |
| CDY00104 | Canola | nucleus | 31.74 | 29.81 |
| CDY39311 | Canola | nucleus | 31.06 | 29.74 |
| CDX85059 | Canola | nucleus | 22.87 | 28.15 |
| CDY56033 | Canola | nucleus | 25.94 | 27.44 |
| CDX85230 | Canola | nucleus | 31.74 | 27.43 |
| CDY71124 | Canola | nucleus | 23.89 | 27.24 |
| CDX74428 | Canola | nucleus | 29.35 | 27.13 |
| CDX86403 | Canola | nucleus | 31.06 | 26.45 |
| CDY46298 | Canola | cytosol | 7.51 | 26.19 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078FNV0 | UniProt:A0A078FNV0 | EnsemblPlants:CDY14559 | ProteinID:CDY14559 |
| ProteinID:CDY14559.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00079301001 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:IPR013087 | PFAM:PD125774 |
| PFAM:PF04770 | ScanProsite:PS00028 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF5 | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EE007A | InterPro:ZF_HD_homeobox_Cys/His_dimer | InterPro:Znf_C2H2_type | SEG:seg |
Description
BnaC03g49000DBnaC03g49000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNV0]
Coordinates
chrLK032044:+:674338..675317
Molecular Weight (calculated)
32257.4 Da
IEP (calculated)
6.154
GRAVY (calculated)
-0.989
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFEDNNNNE EEEEMNHHEE EEEEEDDAVY DSPPLPPPSG VLKTSTESPD TAGTTSTGGG GFMVVHGGSS GGGGGSRFRF RECLKNQAVN IGGHAVDGCG
101: EFMPAGIEGT IDALKCAACG CHRNFHRKEL PYFHHHGPPH QPPPPPPPPG FYRLPAPVSY RPPPSQAPPL QLALPPPPQR ERSEDRMETS SAEAGGGGSG
201: IRKRFRTKFT PEQKERMLAL AESIGWRIQR QDDEVIQRFC QETGVPRQVL KVWLHNNKHT LGKSSSPPLH QHQNPTLPHP PQPSSFHHEQ DQP
101: EFMPAGIEGT IDALKCAACG CHRNFHRKEL PYFHHHGPPH QPPPPPPPPG FYRLPAPVSY RPPPSQAPPL QLALPPPPQR ERSEDRMETS SAEAGGGGSG
201: IRKRFRTKFT PEQKERMLAL AESIGWRIQR QDDEVIQRFC QETGVPRQVL KVWLHNNKHT LGKSSSPPLH QHQNPTLPHP PQPSSFHHEQ DQP
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
Arabidopsis Description
ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.