Factsheet for Solyc04g014260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102980.2.1
Solyc02g067310.2.1
Solyc02g067320.1.1
Solyc03g098060.1.1
Solyc04g014260.1.1
Solyc04g080240.2.1
Solyc04g080490.2.1
Solyc05g007580.1.1
Solyc05g051420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65410.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT5G65410.1	Solyc04g080490.2.1	AT1G75240.1	16428600
AT5G65410.1	Solyc04g080490.2.1	AT2G18350.1	16428600
AT5G65410.1	Solyc02g067310.2.1	AT3G28920.1	16428600
AT5G65410.1	Solyc02g067320.1.1	AT3G28920.1	16428600
AT5G65410.1	Solyc04g080490.2.1	AT3G50890.1	16428600
AT5G65410.1	Solyc05g007580.1.1	AT5G15210.1	16428600
AT5G65410.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT5G65410.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT5G65410.1	Solyc02g067310.2.1	AT5G39760.1	21798944
AT5G65410.1	Solyc02g067320.1.1	AT5G39760.1	21798944
AT5G65410.1	Solyc03g098060.1.1	AT5G42780.1	16428600
AT5G65410.1	Solyc04g080240.2.1	AT5G42950.1	16120600
AT5G65410.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT5G65410.1	Solyc05g051420.1.1	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060623	Potato	nucleus	94.33	95.88
Solyc05g051420.1.1	Tomato	nucleus	45.34	67.07
Solyc04g074990.2.1	Tomato	nucleus	34.01	58.74
VIT_00s0199g00250.t01	Wine grape	nucleus	55.47	56.15
KRH74513	Soybean	nucleus	52.23	50.79
GSMUA_Achr5P05500_001	Banana	nucleus	46.96	48.74
GSMUA_Achr7P19060_001	Banana	nucleus	40.49	48.54
GSMUA_Achr3P20390_001	Banana	nucleus	39.68	47.34
GSMUA_Achr10P...	Banana	nucleus	43.32	46.72
Os09t0466400-01	Rice	nucleus	52.23	46.24
GSMUA_Achr6P02170_001	Banana	nucleus	42.91	45.89
KRH69650	Soybean	nucleus	54.66	45.76
Solyc03g116070.1.1	Tomato	mitochondrion	14.98	44.58
Zm00001d020774_P001	Maize	nucleus	48.99	44.32
TraesCS5D01G253100.1	Wheat	nucleus	51.82	43.24
GSMUA_AchrUn_...	Banana	nucleus	43.72	43.2
TraesCS5B01G243800.1	Wheat	nucleus	51.42	42.76
Os08t0479400-01	Rice	nucleus	50.2	42.76
HORVU5Hr1G069730.1	Barley	nucleus	51.82	42.38
TraesCS5A01G246500.1	Wheat	nucleus	50.2	41.75
EER96888	Sorghum	nucleus	51.01	41.72
Zm00001d031840_P001	Maize	nucleus	50.2	40.26
Zm00001d005931_P001	Maize	nucleus	46.56	40.21
Solyc03g061620.1.1	Tomato	cytosol	14.17	39.77
EES15144	Sorghum	nucleus	49.8	39.55
Solyc02g067330.1.1	Tomato	cytosol, nucleus, plastid	16.19	39.22
Solyc03g098060.1.1	Tomato	nucleus	27.94	38.55
CDY54719	Canola	nucleus	36.84	37.76
Bra037816.1-P	Field mustard	nucleus	36.84	37.6
Solyc05g018740.1.1	Tomato	cytosol	17.81	36.97
CDX81284	Canola	nucleus	38.06	36.86
AT5G65410.1	Thale cress	nucleus	40.08	35.48
CDY33960	Canola	nucleus	37.65	34.57
CDY37827	Canola	nucleus	38.06	34.56
Bra031859.1-P	Field mustard	nucleus	38.06	34.56
Bra024382.1-P	Field mustard	nucleus	40.08	33.79
CDY14559	Canola	nucleus	40.08	33.79
Solyc04g080490.2.1	Tomato	nucleus	38.46	32.76
Solyc01g102980.2.1	Tomato	nucleus	38.06	32.41
Solyc02g087970.1.1	Tomato	mitochondrion	11.74	32.22
Solyc05g020000.1.1	Tomato	cytosol	14.98	31.09
Solyc01g103810.1.1	Tomato	cytosol	14.57	31.03
Solyc01g103820.1.1	Tomato	cytosol	11.74	30.85
Solyc02g067310.2.1	Tomato	nucleus	36.44	30.82
Solyc02g085160.1.1	Tomato	nucleus	33.2	27.99
Solyc05g007580.1.1	Tomato	nucleus	32.79	27.27
Solyc02g067320.1.1	Tomato	nucleus	36.03	26.89
Solyc09g089550.2.1	Tomato	nucleus	27.13	8.32

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:Homeodomain_ZF_HD	InterPro:IPR001356	InterPro:IPR006456	UniProt:K4BPT0	PFAM:PD125774	PFAM:PF04770
PFscan:PS50071	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF5	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g014260.1
EnsemblPlants:Solyc04g014260.1.1	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002766412	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

No Description!

Coordinates

chr4:-:4560854..4561970

Molecular Weight (calculated)

27723.7 Da

IEP (calculated)

7.574

GRAVY (calculated)

-0.832

Length

247 amino acids

Sequence
(BLAST)

001: MEFEDQQKQR DEEIAAAPRH NDSLDNSDLT TKMPPSPQLE LEPLTAVQLW TNNKPKYKEC LKNHAVGIGG HAVDGCGEFL PAGEDGSIDS LKCAACNCHR
101: NFHRKIAPPP IAAAAAGVGG EPVPFVYHSH NQLPTYYRTL PPPCGYLQYH VAPNQRPLAL PSTSGGYRED QEDISHPNYS GGSKKRFRTK FSQVQKDKMQ
201: ELADKLGWRI QREDEELVQQ LCNETGITRQ VFKVWMHNNK HTLGKKP

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.