Factsheet for Solyc04g080490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102980.2.1
Solyc02g067310.2.1
Solyc02g067320.1.1
Solyc04g014260.1.1
Solyc04g080490.2.1
Solyc05g007580.1.1
Solyc05g051420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT1G75240.1	Solyc04g080490.2.1	AT1G75240.1	16428600
AT1G75240.1	Solyc02g067310.2.1	AT3G28920.1	16428600
AT1G75240.1	Solyc02g067320.1.1	AT3G28920.1	16428600
AT1G75240.1	Solyc04g080490.2.1	AT3G50890.1	16428600
AT1G75240.1	Solyc05g007580.1.1	AT5G15210.1	16428600
AT1G75240.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT1G75240.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT1G75240.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT1G75240.1	Solyc05g051420.1.1	AT5G65410.1	16428600
AT2G18350.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT2G18350.1	Solyc02g067310.2.1	AT3G28920.1	16428600
AT2G18350.1	Solyc02g067320.1.1	AT3G28920.1	16428600
AT2G18350.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT2G18350.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT2G18350.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT2G18350.1	Solyc05g051420.1.1	AT5G65410.1	16428600
AT3G50890.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT3G50890.1	Solyc04g080490.2.1	AT1G75240.1	16428600
AT3G50890.1	Solyc02g067310.2.1	AT3G28920.1	16428600
AT3G50890.1	Solyc02g067320.1.1	AT3G28920.1	16428600
AT3G50890.1	Solyc05g007580.1.1	AT5G15210.1	16428600
AT3G50890.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT3G50890.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT3G50890.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT3G50890.1	Solyc05g051420.1.1	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009581	Potato	nucleus	87.59	89.44
Solyc04g074990.2.1	Tomato	nucleus	26.55	53.85
Solyc05g051420.1.1	Tomato	nucleus	28.97	50.3
Solyc03g116070.1.1	Tomato	mitochondrion	13.1	45.78
Solyc03g061620.1.1	Tomato	cytosol	13.45	44.32
CDY37252	Canola	nucleus	37.93	42.15
CDY62531	Canola	nucleus	37.93	41.83
Solyc03g098060.1.1	Tomato	nucleus	25.17	40.78
Solyc02g087970.1.1	Tomato	mitochondrion	12.41	40.0
VIT_18s0001g12580.t01	Wine grape	nucleus	43.1	39.56
Solyc04g014260.1.1	Tomato	nucleus	32.76	38.46
Solyc02g067330.1.1	Tomato	cytosol, nucleus, plastid	13.45	38.24
CDX85886	Canola	nucleus	38.62	38.1
Bra008185.1-P	Field mustard	nucleus	38.62	38.1
Os01t0635550-00	Rice	nucleus	30.0	37.5
CDX68137	Canola	nucleus	38.28	37.37
CDX73152	Canola	nucleus	38.28	37.12
Bra015857.1-P	Field mustard	nucleus	38.62	37.09
Bra003759.1-P	Field mustard	nucleus	37.59	37.07
AT2G18350.1	Thale cress	nucleus	33.45	37.02
Bra036852.1-P	Field mustard	nucleus	27.93	36.99
CDX77960	Canola	nucleus	27.93	36.99
CDY70550	Canola	nucleus	32.76	36.97
Zm00001d009674_P001	Maize	nucleus	30.34	36.82
CDY45419	Canola	nucleus	36.55	36.81
CDX73775	Canola	nucleus	27.24	36.74
TraesCS3B01G258400.1	Wheat	nucleus	29.31	36.64
TraesCS1A01G418600.1	Wheat	nucleus	28.28	36.44
TraesCS3D01G224100.1	Wheat	nucleus	29.66	36.44
CDY70108	Canola	nucleus	33.1	36.23
AT3G50890.1	Thale cress	nucleus	30.69	35.74
Bra037224.1-P	Field mustard	nucleus	32.41	35.47
TraesCS3A01G226100.1	Wheat	nucleus	28.62	35.32
Os05t0579300-01	Rice	nucleus	31.03	35.29
AT1G75240.1	Thale cress	nucleus	37.59	35.28
Solyc01g102980.2.1	Tomato	nucleus	35.17	35.17
CDY71124	Canola	nucleus	31.03	35.02
HORVU1Hr1G091470.1	Barley	nucleus	28.28	34.89
CDX90679	Canola	nucleus	28.97	34.57
Solyc05g018740.1.1	Tomato	cytosol	13.79	33.61
CDY28987	Canola	nucleus	28.28	33.47
Solyc02g085160.1.1	Tomato	nucleus	33.79	33.45
TraesCS1B01G448600.1	Wheat	nucleus	28.97	33.33
TraesCS1D01G426300.1	Wheat	nucleus	28.28	32.8
Solyc01g103820.1.1	Tomato	cytosol	10.34	31.91
Solyc01g103810.1.1	Tomato	cytosol	12.76	31.9
GSMUA_Achr10P...	Banana	nucleus	28.28	30.94
GSMUA_Achr3P31090_001	Banana	nucleus	30.0	30.74
Solyc05g020000.1.1	Tomato	cytosol	12.41	30.25
GSMUA_Achr2P23010_001	Banana	nucleus	30.0	29.9
GSMUA_Achr8P27010_001	Banana	nucleus	32.07	28.97
Solyc02g067310.2.1	Tomato	nucleus	28.28	28.08
GSMUA_Achr7P25600_001	Banana	nucleus	33.1	27.67
GSMUA_Achr4P14910_001	Banana	nucleus	31.38	27.58
Bra012882.1-P	Field mustard	nucleus	25.17	27.55
GSMUA_Achr4P07850_001	Banana	nucleus	30.0	26.28
Solyc05g007580.1.1	Tomato	nucleus	26.9	26.26
OQU78488	Sorghum	plastid	32.41	25.2
Solyc02g067320.1.1	Tomato	nucleus	28.28	24.77
GSMUA_Achr6P22120_001	Banana	nucleus	32.07	23.37
GSMUA_Achr6P24230_001	Banana	nucleus	17.93	23.32
GSMUA_Achr6P27240_001	Banana	plastid	30.69	23.18
KXG30914	Sorghum	nucleus	30.69	21.92
Zm00001d017784_P001	Maize	nucleus	30.69	21.34
GSMUA_Achr3P19060_001	Banana	nucleus	17.59	21.25
Os02t0706600-00	Rice	nucleus	31.03	21.08
Zm00001d051573_P001	Maize	nucleus	31.03	20.18
TraesCS6B01G301000.1	Wheat	nucleus	30.34	19.09
TraesCS6A01G273700.1	Wheat	nucleus	30.34	18.92
TraesCS6D01G253700.1	Wheat	nucleus	30.34	18.92
HORVU6Hr1G069090.1	Barley	nucleus	28.97	18.22
HORVU6Hr1G069070.1	Barley	plastid	12.07	12.46
Solyc09g089550.2.1	Tomato	nucleus	23.1	8.32

Protein Annotations

EnsemblPlants:Solyc04g080490.2.1	EnsemblPlantsGene:Solyc04g080490.2	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PANTHER:PTHR31948:SF9	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002765888	UniProt:K4BVC8	MapMan:15.5.3.13	:

Description

No Description!

Coordinates

chr4:-:64650886..64652793

Molecular Weight (calculated)

31549.1 Da

IEP (calculated)

8.623

GRAVY (calculated)

-0.767

Length

290 amino acids

Sequence
(BLAST)

001: MALGGGNEEK EMRISGFQNI DLVSPGGAAP DDIVSAAPHN NSTTGSNKLN KGTSTVRGRY RECLKNHAAN IGGNVTDGCG EFMPSGEEGT LEALKCAACN
101: CHRNFHRKEI PNNVGAGVGG GVGGDNNNNA GIMVVHPLQL PQPLPSPIPS LNHHHHHHHQ HGGRSIWTTM PPQPVKMAFG GSGGGSGATD SSSEELNFNT
201: YHHQQATSVP PQQPFMLAKK RFRTKFSQEQ KEKMLEFAEK LGWRIPREDD AEVQRFCSQV GVKRQVFKVW MHNNKNPSSA KKNIIQEDQP

Best Arabidopsis Sequence Match ( AT1G75240.1 )
(BLAST)

001: MDMRSHEMIE RRREDNGNNN GGVVISNIIS TNIDDNCNGN NNNTRVSCNS QTLDHHQSKS PSSFSISAAA KPTVRYRECL KNHAASVGGS VHDGCGEFMP
101: SGEEGTIEAL RCAACDCHRN FHRKEMDGVG SSDLISHHRH HHYHHNQYGG GGGRRPPPPN MMLNPLMLPP PPNYQPIHHH KYGMSPPGGG GMVTPMSVAY
201: GGGGGGAESS SEDLNLYGQS SGEGAGAAAG QMAFSMSSSK KRFRTKFTTD QKERMMDFAE KLGWRMNKQD EEELKRFCGE IGVKRQVFKV WMHNNKNNAK
301: KPPTPTTTL

Arabidopsis Description

ZHD5ZHD5 [Source:UniProtKB/TrEMBL;Acc:A0A178WFZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.