Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G224100.1 | Wheat | nucleus | 98.71 | 97.03 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 97.41 | 96.17 |
| Os01t0635550-00 | Rice | nucleus | 68.1 | 68.1 |
| Zm00001d009674_P001 | Maize | nucleus | 52.16 | 50.63 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 51.29 | 47.22 |
| OQU78488 | Sorghum | plastid | 54.74 | 34.05 |
| TraesCS5B01G141400.1 | Wheat | cytosol | 13.79 | 34.04 |
| TraesCS3B01G484100.1 | Wheat | cytosol | 13.79 | 33.33 |
| CDX77960 | Canola | nucleus | 29.74 | 31.51 |
| Bra036852.1-P | Field mustard | nucleus | 29.74 | 31.51 |
| CDX73775 | Canola | nucleus | 28.45 | 30.7 |
| PGSC0003DMT400009581 | Potato | nucleus | 37.07 | 30.28 |
| TraesCS5B01G226000.1 | Wheat | mitochondrion | 12.07 | 30.11 |
| CDX90679 | Canola | nucleus | 31.47 | 30.04 |
| AT3G50890.1 | Thale cress | nucleus | 31.47 | 29.32 |
| Solyc04g080490.2.1 | Tomato | nucleus | 36.64 | 29.31 |
| CDY28987 | Canola | nucleus | 30.17 | 28.57 |
| CDY70550 | Canola | nucleus | 31.47 | 28.4 |
| TraesCS2B01G322200.1 | Wheat | nucleus | 34.91 | 27.65 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 28.02 | 27.54 |
| CDY37252 | Canola | nucleus | 30.6 | 27.2 |
| CDY70108 | Canola | nucleus | 31.03 | 27.17 |
| Bra037224.1-P | Field mustard | nucleus | 31.03 | 27.17 |
| CDY62531 | Canola | nucleus | 30.6 | 27.0 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 34.05 | 26.6 |
| AT2G18350.1 | Thale cress | nucleus | 29.74 | 26.34 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 35.78 | 26.27 |
| CDY71124 | Canola | nucleus | 28.88 | 26.07 |
| Solyc02g085160.1.1 | Tomato | nucleus | 32.33 | 25.6 |
| Bra003759.1-P | Field mustard | nucleus | 31.47 | 24.83 |
| PGSC0003DMT400009033 | Potato | nucleus | 31.9 | 24.5 |
| Bra015857.1-P | Field mustard | nucleus | 31.9 | 24.5 |
| CDX85886 | Canola | nucleus | 31.03 | 24.49 |
| TraesCS1B01G106800.1 | Wheat | nucleus | 30.6 | 24.48 |
| CDY45419 | Canola | nucleus | 30.17 | 24.31 |
| KRH76785 | Soybean | nucleus | 33.19 | 24.29 |
| CDX68137 | Canola | nucleus | 31.03 | 24.24 |
| Bra008185.1-P | Field mustard | nucleus | 30.6 | 24.15 |
| CDX73152 | Canola | nucleus | 31.03 | 24.08 |
| Bra012882.1-P | Field mustard | nucleus | 27.16 | 23.77 |
| KRH08258 | Soybean | nucleus | 33.62 | 23.71 |
| KRH69909 | Soybean | nucleus | 33.62 | 23.35 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 45.26 | 22.78 |
| AT1G75240.1 | Thale cress | nucleus | 29.74 | 22.33 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 22.84 | 22.08 |
| KRH28682 | Soybean | nucleus | 31.9 | 22.02 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 35.34 | 20.65 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 19.83 | 20.63 |
| TraesCS5B01G225700.1 | Wheat | nucleus | 32.33 | 19.23 |
| VIT_04s0023g01880.t01 | Wine grape | nucleus | 34.05 | 18.24 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G258400.1 | EnsemblPlantsGene:TraesCS3B01G258400 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | ncoils:Coil |
| PANTHER:PTHR31948 | PANTHER:PTHR31948:SF17 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : |
Description
No Description!
Coordinates
chr3B:-:416135258..416135956
Molecular Weight (calculated)
25469.7 Da
IEP (calculated)
8.319
GRAVY (calculated)
-0.961
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFQGEEDGD GSDVGDGAPP AAPHRSATAN GPADNMQAEA RRQYHECLRN HAAAAGGHVL DGCCEFMPAS PEDPLACAAC GCHRSFHRRD PSPGRAHLPL
101: LAASARAPLL LPPAASKHPH QRLPFPYGLA ASGGTGTTTE SSSEERRGPS PAPRKRSRTT FTREQKEQML EFAERVGWRL QRQDEAMVGH FCAQAGVRRQ
201: ALKVWMHNNK QSSSGRRQQQ EKQLQEHRQE QQ
101: LAASARAPLL LPPAASKHPH QRLPFPYGLA ASGGTGTTTE SSSEERRGPS PAPRKRSRTT FTREQKEQML EFAERVGWRL QRQDEAMVGH FCAQAGVRRQ
201: ALKVWMHNNK QSSSGRRQQQ EKQLQEHRQE QQ
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.