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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69541
CDX73152
CDX73775
CDX74428
CDX77960
CDX81284
CDX81638
CDX85059
CDX85230
CDX86403
CDX90679
CDX95914
CDY00104
CDY01760
CDY14559
CDY20008
CDY28566
CDY28987
CDY33960
CDY37252
CDY37827
CDY39311
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G75240.1 CDX81638 AT1G14440.1 16428600
AT1G75240.1 CDY39311 AT1G14440.1 16428600
AT1G75240.1 CDY45257 AT1G14440.1 16428600
AT1G75240.1 CDY53549 AT1G14440.1 16428600
AT1G75240.1 CDX95914 AT1G69600.1 16428600
AT1G75240.1 CDY01760 AT1G69600.1 16428600
AT1G75240.1 CDY28566 AT1G69600.1 16428600
AT1G75240.1 CDY44079 AT1G69600.1 16428600
AT1G75240.1 CDX73152 AT1G75240.1 16428600
AT1G75240.1 CDY37252 AT1G75240.1 16428600
AT1G75240.1 CDY45419 AT1G75240.1 16428600
AT1G75240.1 CDY62531 AT1G75240.1 16428600
AT1G75240.1 CDX85230 AT3G28920.1 16428600
AT1G75240.1 CDX86403 AT3G28920.1 16428600
AT1G75240.1 CDY00104 AT3G28920.1 16428600
AT1G75240.1 CDY20008 AT3G28920.1 16428600
AT1G75240.1 CDX73775 AT3G50890.1 16428600
AT1G75240.1 CDX77960 AT3G50890.1 16428600
AT1G75240.1 CDX90679 AT3G50890.1 16428600
AT1G75240.1 CDY28987 AT3G50890.1 16428600
AT1G75240.1 CDX69541 AT5G15210.1 16428600
AT1G75240.1 CDX85059 AT5G15210.1 16428600
AT1G75240.1 CDX74428 AT5G39760.1 16428600
AT1G75240.1 CDY56033 AT5G39760.1 16428600
AT1G75240.1 CDX81284 AT5G65410.1 16428600
AT1G75240.1 CDY14559 AT5G65410.1 16428600
AT1G75240.1 CDY33960 AT5G65410.1 16428600
AT1G75240.1 CDY37827 AT5G65410.1 16428600
AT1G75240.1 CDY54719 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62531 Canola nucleus 98.08 97.34
Bra008185.1-P Field mustard nucleus 98.08 87.07
CDX73152 Canola nucleus 91.57 79.93
CDY45419 Canola nucleus 88.12 79.86
AT1G75240.1 Thale cress nucleus 88.12 74.43
CDX68137 Canola nucleus 84.29 74.07
CDX85886 Canola nucleus 83.14 73.81
CDY21695 Canola mitochondrion 16.48 48.86
CDX81897 Canola mitochondrion 16.09 47.73
CDX83807 Canola mitochondrion 16.09 47.73
CDX96695 Canola mitochondrion 15.71 46.59
CDX73105 Canola mitochondrion 16.48 45.74
CDY26722 Canola mitochondrion 15.33 45.45
CDY19248 Canola mitochondrion 15.33 45.45
CDX96558 Canola mitochondrion 16.09 44.68
CDX88950 Canola nucleus 35.25 43.81
CDY24844 Canola nucleus 34.87 43.33
CDY08945 Canola nucleus 34.87 43.33
CDX86404 Canola mitochondrion 14.94 42.86
CDY34299 Canola nucleus 36.02 41.78
CDX85228 Canola mitochondrion, nucleus 14.56 41.76
CDY03431 Canola nucleus 35.63 41.7
CDX68172 Canola mitochondrion 15.33 41.24
CDX85849 Canola mitochondrion 15.33 41.24
CDY20009 Canola mitochondrion 15.33 40.82
CDY00105 Canola mitochondrion 15.33 40.82
CDY70550 Canola nucleus 38.7 39.3
CDY70108 Canola nucleus 39.46 38.87
PGSC0003DMT400009581 Potato nucleus 41.38 38.03
Solyc04g080490.2.1 Tomato nucleus 42.15 37.93
CDX77960 Canola nucleus 31.42 37.44
CDX73775 Canola nucleus 30.65 37.21
CDY54719 Canola nucleus 33.33 36.1
CDY71124 Canola nucleus 35.25 35.8
CDX81284 Canola nucleus 34.48 35.29
VIT_18s0001g12580.t01 Wine grape nucleus 42.15 34.81
CDX88760 Canola nucleus 24.14 34.81
TraesCS1A01G418600.1 Wheat nucleus 29.89 34.67
CDY33960 Canola nucleus 35.63 34.57
CDY37827 Canola nucleus 36.02 34.56
CDY46298 Canola cytosol 11.11 34.52
CDX90679 Canola nucleus 31.8 34.16
CDY69628 Canola nucleus 22.99 33.52
HORVU1Hr1G091470.1 Barley nucleus 29.89 33.19
CDY28987 Canola nucleus 31.03 33.06
CDX95914 Canola nucleus 29.12 32.9
CDY14559 Canola nucleus 36.78 32.76
TraesCS1B01G448600.1 Wheat nucleus 31.42 32.54
Zm00001d009674_P001 Maize nucleus 29.5 32.22
Os05t0579300-01 Rice nucleus 31.42 32.16
TraesCS1D01G426300.1 Wheat nucleus 30.27 31.6
CDY09363 Canola nucleus 35.63 31.21
Os01t0635550-00 Rice nucleus 27.59 31.03
CDY41692 Canola nucleus 35.63 31.0
CDY53549 Canola nucleus 37.16 30.89
CDX81638 Canola nucleus 37.16 30.79
TraesCS3B01G258400.1 Wheat nucleus 27.2 30.6
CDY28566 Canola nucleus 29.89 30.59
CDY44079 Canola nucleus 29.89 30.59
CDY45257 Canola nucleus 36.4 30.55
CDY01760 Canola nucleus 29.89 30.47
TraesCS3A01G226100.1 Wheat nucleus 26.82 29.79
CDY39311 Canola nucleus 34.87 29.74
TraesCS3D01G224100.1 Wheat nucleus 26.82 29.66
CDX69541 Canola nucleus 29.89 29.66
GSMUA_Achr2P23010_001 Banana nucleus 32.57 29.21
GSMUA_Achr10P... Banana nucleus 29.5 29.06
CDY20008 Canola nucleus 29.89 27.76
GSMUA_Achr3P31090_001 Banana nucleus 29.89 27.56
GSMUA_Achr8P27010_001 Banana nucleus 33.33 27.1
CDY00104 Canola nucleus 31.42 26.28
GSMUA_Achr4P14910_001 Banana nucleus 32.95 26.06
CDX85059 Canola nucleus 23.75 26.05
CDX74428 Canola nucleus 31.42 25.87
GSMUA_Achr4P07850_001 Banana nucleus 32.18 25.38
GSMUA_Achr7P25600_001 Banana nucleus 33.72 25.36
CDY56033 Canola nucleus 26.44 24.91
CDX85230 Canola nucleus 32.18 24.78
GSMUA_Achr6P24230_001 Banana nucleus 20.69 24.22
CDX86403 Canola nucleus 31.42 23.84
GSMUA_Achr3P19060_001 Banana nucleus 20.31 22.08
OQU78488 Sorghum plastid 31.42 21.98
GSMUA_Achr6P27240_001 Banana plastid 32.18 21.88
GSMUA_Achr6P22120_001 Banana nucleus 32.57 21.36
Os02t0706600-00 Rice nucleus 33.72 20.61
KXG30914 Sorghum nucleus 31.8 20.44
Zm00001d017784_P001 Maize nucleus 31.8 19.9
TraesCS6B01G301000.1 Wheat nucleus 33.33 18.87
TraesCS6A01G273700.1 Wheat nucleus 33.33 18.71
TraesCS6D01G253700.1 Wheat nucleus 33.33 18.71
Zm00001d051573_P001 Maize nucleus 31.42 18.39
HORVU6Hr1G069090.1 Barley nucleus 31.42 17.79
HORVU6Hr1G069070.1 Barley plastid 11.88 11.03
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13GO:A0A078HH96UniProt:A0A078HH96EnsemblPlants:CDY37252ProteinID:CDY37252
ProteinID:CDY37252.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00063746001
InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456PFAM:PD125774PFAM:PF04770PFscan:PS51523
PANTHER:PTHR31948PANTHER:PTHR31948:SF43SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0004EDE99E
InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg::::
Description
BnaCnng08060DBnaCnng08060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HH96]
Coordinates
chrLK032396:-:59290..60704
Molecular Weight (calculated)
28812.9 Da
IEP (calculated)
9.014
GRAVY (calculated)
-0.978
Length
261 amino acids
Sequence
(BLAST)
001: MDMRSHEMIE RRSDDNGNND HHQSKSSSIS AAAKTTVRYR ECLKNHAANV GGSVQDGCGE FMPSGEEGTL EALRCAACDC HRNFHRKEVD GVGSSAHHPR
101: HHHQYGGGGG RRPPPPNMML NPLMLPPPPN YAQMHHHKYG VSPPSGMVTP MSVAYGGGGG AESSSEDLNM YGQSSGEHGG GATAGQMGFS KKRFRTKFTT
201: EQKERMMEFA EKLGWRMNKQ DEEELKRFCN EIGVKRQVFK VWMHNNKSNA KKPTTTTPGT L
Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Arabidopsis Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.