Factsheet for Zm00001d017784_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005757_P001
Zm00001d005931_P001
Zm00001d009674_P001
Zm00001d017784_P001
Zm00001d020460_P001
Zm00001d020774_P001
Zm00001d031840_P001
Zm00001d032175_P001
Zm00001d041780_P001
Zm00001d049000_P001
Zm00001d050443_P001
Zm00001d051573_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	Zm00001d041780_P001	AT1G14440.1	16428600
AT1G75240.1	Zm00001d049000_P001	AT1G14440.1	16428600
AT1G75240.1	Zm00001d009674_P001	AT1G75240.1	16428600
AT1G75240.1	Zm00001d017784_P001	AT1G75240.1	16428600
AT1G75240.1	Zm00001d051573_P001	AT1G75240.1	16428600
AT1G75240.1	Zm00001d009674_P001	AT3G50890.1	16428600
AT1G75240.1	Zm00001d017784_P001	AT3G50890.1	16428600
AT1G75240.1	Zm00001d051573_P001	AT3G50890.1	16428600
AT1G75240.1	Zm00001d005757_P001	AT5G15210.1	16428600
AT1G75240.1	Zm00001d020460_P001	AT5G15210.1	16428600
AT1G75240.1	Zm00001d032175_P001	AT5G15210.1	16428600
AT1G75240.1	Zm00001d050443_P001	AT5G15210.1	16428600
AT1G75240.1	Zm00001d005931_P001	AT5G65410.1	16428600
AT1G75240.1	Zm00001d020774_P001	AT5G65410.1	16428600
AT1G75240.1	Zm00001d031840_P001	AT5G65410.1	16428600
AT2G18350.1	Zm00001d041780_P001	AT1G14440.1	16428600
AT2G18350.1	Zm00001d049000_P001	AT1G14440.1	16428600
AT2G18350.1	Zm00001d005931_P001	AT5G65410.1	16428600
AT2G18350.1	Zm00001d020774_P001	AT5G65410.1	16428600
AT2G18350.1	Zm00001d031840_P001	AT5G65410.1	16428600
AT3G50890.1	Zm00001d041780_P001	AT1G14440.1	16428600
AT3G50890.1	Zm00001d049000_P001	AT1G14440.1	16428600
AT3G50890.1	Zm00001d009674_P001	AT1G75240.1	16428600
AT3G50890.1	Zm00001d017784_P001	AT1G75240.1	16428600
AT3G50890.1	Zm00001d051573_P001	AT1G75240.1	16428600
AT3G50890.1	Zm00001d005757_P001	AT5G15210.1	16428600
AT3G50890.1	Zm00001d020460_P001	AT5G15210.1	16428600
AT3G50890.1	Zm00001d032175_P001	AT5G15210.1	16428600
AT3G50890.1	Zm00001d050443_P001	AT5G15210.1	16428600
AT3G50890.1	Zm00001d005931_P001	AT5G65410.1	16428600
AT3G50890.1	Zm00001d020774_P001	AT5G65410.1	16428600
AT3G50890.1	Zm00001d031840_P001	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051573_P001	Maize	nucleus	83.93	78.48
Os02t0706600-00	Rice	nucleus	64.27	62.76
TraesCS6D01G253700.1	Wheat	nucleus	64.03	57.42
TraesCS6B01G301000.1	Wheat	nucleus	62.59	56.62
TraesCS6A01G273700.1	Wheat	nucleus	63.07	56.56
Zm00001d009674_P001	Maize	nucleus	25.66	44.77
Zm00001d023286_P001	Maize	cytosol	10.31	43.88
Zm00001d023289_P001	Maize	cytosol	10.31	43.88
Zm00001d052395_P001	Maize	plastid	8.87	43.02
GSMUA_Achr10P...	Banana	nucleus	27.1	42.64
GSMUA_Achr2P23010_001	Banana	nucleus	28.54	40.89
Zm00001d044662_P001	Maize	cytosol, plastid	9.35	39.0
HORVU6Hr1G069070.1	Barley	plastid	24.7	36.65
Zm00001d020774_P001	Maize	nucleus	22.78	34.8
CDX73775	Canola	nucleus	17.51	33.95
Zm00001d005931_P001	Maize	nucleus	23.26	33.92
CDX77960	Canola	nucleus	17.75	33.79
Bra036852.1-P	Field mustard	nucleus	17.75	33.79
Zm00001d032177_P001	Maize	mitochondrion	9.35	32.77
PGSC0003DMT400009581	Potato	nucleus	22.06	32.39
CDX90679	Canola	nucleus	18.7	32.1
CDY37252	Canola	nucleus	19.9	31.8
AT3G50890.1	Thale cress	nucleus	18.94	31.73
CDY62531	Canola	nucleus	19.9	31.56
CDY28987	Canola	nucleus	18.23	31.02
Zm00001d031840_P001	Maize	nucleus	22.78	30.84
Zm00001d050452_P001	Maize	mitochondrion	9.35	30.71
Solyc04g080490.2.1	Tomato	nucleus	21.34	30.69
Zm00001d020459_P001	Maize	mitochondrion	8.15	30.63
CDY70550	Canola	nucleus	18.7	30.35
CDY45419	Canola	nucleus	20.62	29.86
CDY70108	Canola	nucleus	18.94	29.81
Zm00001d033791_P001	Maize	cytosol, mitochondrion, nucleus	16.31	29.44
Bra037224.1-P	Field mustard	nucleus	18.7	29.43
AT2G18350.1	Thale cress	nucleus	18.47	29.39
CDX85886	Canola	nucleus	20.62	29.25
CDY71124	Canola	nucleus	17.99	29.18
VIT_18s0001g12580.t01	Wine grape	nucleus	22.06	29.11
KRH76785	Soybean	nucleus	22.06	29.02
Bra003759.1-P	Field mustard	nucleus	20.38	28.91
Bra008185.1-P	Field mustard	nucleus	20.38	28.91
CDX73152	Canola	nucleus	20.62	28.76
CDX68137	Canola	nucleus	20.38	28.62
Bra015857.1-P	Field mustard	nucleus	20.62	28.48
Zm00001d041780_P001	Maize	nucleus	23.5	28.08
Zm00001d013409_P001	Maize	cytosol, mitochondrion, nucleus	15.83	27.5
Zm00001d003645_P001	Maize	nucleus	19.66	27.33
Solyc02g085160.1.1	Tomato	nucleus	19.18	27.3
KRH69909	Soybean	nucleus	21.82	27.25
AT1G75240.1	Thale cress	nucleus	20.14	27.18
KRH28682	Soybean	nucleus	21.82	27.08
KRH08258	Soybean	nucleus	21.1	26.75
PGSC0003DMT400009033	Potato	nucleus	18.94	26.16
Bra012882.1-P	Field mustard	nucleus	16.31	25.66
Zm00001d005757_P001	Maize	nucleus	20.14	23.27
Zm00001d020460_P001	Maize	nucleus	20.38	22.97
Zm00001d049000_P001	Maize	plastid	22.54	22.38
Zm00001d032175_P001	Maize	cytosol	19.9	22.25
Zm00001d050443_P001	Maize	nucleus	19.18	21.86
VIT_04s0023g01880.t01	Wine grape	nucleus	20.14	19.4

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	UniProt:A0A1D6HHM5	ProteinID:AQK74035.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:Homeodomain_ZF_HD
InterPro:IPR001356	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF11	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000845659F	InterPro:ZF_HD_homeobox_Cys/His_dimer
EnsemblPlantsGene:Zm00001d017784	EnsemblPlants:Zm00001d017784_P001	EnsemblPlants:Zm00001d017784_T001	SEG:seg	:	:

Description

ZF-HD-transcription factor 12Zinc-finger homeodomain protein 5

Coordinates

chr5:-:206700640..206701893

Molecular Weight (calculated)

44776.4 Da

IEP (calculated)

7.059

GRAVY (calculated)

-0.707

Length

417 amino acids

Sequence
(BLAST)

001: MEYKRSSHAQ EEEEDEEEEE EEDDENEEEE EDEEEARGLR YTTAAVAPVG APQQQQVHAQ ALGLGCSHPS QLMDSAAFSR PLLPPNSSLV MQPPLPPPGF
101: PPAHRQQPPH AQLHPRKAER ERDRAAGAQP HVRRHHQEPA KNGVLGGGAA PTSAPSTLGL VPVVEAAQLW RYRECLRNHA ARLGAHVLDG CCEFMPSGGD
201: GAAALACAAC GCHRSFHRRE AVPGGGVAVS PSAAVTPTPT AGANSSRAIP LLLAPPHMHT RPPHHVPASP ASAPAALAES SSEELRGPAP APAPPTHAQV
301: AVVGGSASAP PAPSKKRFRT KFTAEQKDLM REFAHRVGWR VHKPDADAVD AFCAQVGVSR RVLKVWMHNN KHLAKVPPSP PSSSYPQPLP RHHPPPPPLH
401: IHHHPPPQQQ QQQQHDA

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.