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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69541
CDX73152
CDX74428
CDX81284
CDX81638
CDX85059
CDX85230
CDX86403
CDX95914
CDY00104
CDY01760
CDY14559
CDY20008
CDY28566
CDY33960
CDY37252
CDY37827
CDY39311
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G50890.1 CDX81638 AT1G14440.1 16428600
AT3G50890.1 CDY39311 AT1G14440.1 16428600
AT3G50890.1 CDY45257 AT1G14440.1 16428600
AT3G50890.1 CDY53549 AT1G14440.1 16428600
AT3G50890.1 CDX95914 AT1G69600.1 16428600
AT3G50890.1 CDY01760 AT1G69600.1 16428600
AT3G50890.1 CDY28566 AT1G69600.1 16428600
AT3G50890.1 CDY44079 AT1G69600.1 16428600
AT3G50890.1 CDX73152 AT1G75240.1 16428600
AT3G50890.1 CDY37252 AT1G75240.1 16428600
AT3G50890.1 CDY45419 AT1G75240.1 16428600
AT3G50890.1 CDY62531 AT1G75240.1 16428600
AT3G50890.1 CDX85230 AT3G28920.1 16428600
AT3G50890.1 CDX86403 AT3G28920.1 16428600
AT3G50890.1 CDY00104 AT3G28920.1 16428600
AT3G50890.1 CDY20008 AT3G28920.1 16428600
AT3G50890.1 CDX69541 AT5G15210.1 16428600
AT3G50890.1 CDX85059 AT5G15210.1 16428600
AT3G50890.1 CDX74428 AT5G39760.1 16428600
AT3G50890.1 CDY56033 AT5G39760.1 16428600
AT3G50890.1 CDX81284 AT5G65410.1 16428600
AT3G50890.1 CDY14559 AT5G65410.1 16428600
AT3G50890.1 CDY33960 AT5G65410.1 16428600
AT3G50890.1 CDY37827 AT5G65410.1 16428600
AT3G50890.1 CDY54719 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY28987 Canola nucleus 95.06 94.29
Bra012882.1-P Field mustard nucleus 90.53 83.02
AT3G50890.1 Thale cress nucleus 78.19 76.31
CDX77960 Canola nucleus 67.9 75.34
CDX73775 Canola nucleus 65.02 73.49
CDY21695 Canola mitochondrion 17.28 47.73
CDY19248 Canola mitochondrion 16.87 46.59
CDX83807 Canola mitochondrion 16.87 46.59
CDX81897 Canola mitochondrion 16.87 46.59
CDY26722 Canola mitochondrion 16.87 46.59
CDX96695 Canola mitochondrion 16.46 45.45
CDX86404 Canola mitochondrion 16.87 45.05
CDX85228 Canola mitochondrion, nucleus 16.87 45.05
CDX73105 Canola mitochondrion 16.46 42.55
CDY20009 Canola mitochondrion 16.87 41.84
CDY00105 Canola mitochondrion 16.87 41.84
CDX96558 Canola mitochondrion 16.05 41.49
CDX85849 Canola mitochondrion 16.46 41.24
CDX68172 Canola mitochondrion 16.46 41.24
CDY08945 Canola nucleus 32.92 38.1
CDY03431 Canola nucleus 34.57 37.67
CDY34299 Canola nucleus 34.57 37.33
CDY24844 Canola nucleus 32.1 37.14
CDX88950 Canola nucleus 32.1 37.14
CDY54719 Canola nucleus 32.92 33.2
CDX88760 Canola nucleus 24.69 33.15
CDY70550 Canola nucleus 34.16 32.3
CDY37252 Canola nucleus 34.16 31.8
Zm00001d009674_P001 Maize nucleus 31.28 31.8
CDX81284 Canola nucleus 33.33 31.76
CDY62531 Canola nucleus 34.16 31.56
TraesCS1A01G418600.1 Wheat nucleus 29.22 31.56
TraesCS3B01G258400.1 Wheat nucleus 30.04 31.47
Os05t0579300-01 Rice nucleus 32.92 31.37
CDY70108 Canola nucleus 34.16 31.32
CDY69628 Canola nucleus 23.05 31.28
CDX69541 Canola nucleus 33.33 30.8
HORVU1Hr1G091470.1 Barley nucleus 29.63 30.64
TraesCS3A01G226100.1 Wheat nucleus 29.63 30.64
TraesCS3D01G224100.1 Wheat nucleus 29.63 30.51
Os01t0635550-00 Rice nucleus 28.81 30.17
CDY37827 Canola nucleus 33.74 30.15
CDY33960 Canola nucleus 33.33 30.11
PGSC0003DMT400009581 Potato nucleus 34.57 29.58
CDY71124 Canola nucleus 31.28 29.57
CDX95914 Canola nucleus 27.98 29.44
Solyc04g080490.2.1 Tomato nucleus 34.57 28.97
TraesCS1D01G426300.1 Wheat nucleus 29.63 28.8
TraesCS1B01G448600.1 Wheat nucleus 29.63 28.57
CDY46298 Canola cytosol 9.88 28.57
CDY45419 Canola nucleus 33.74 28.47
CDY20008 Canola nucleus 32.92 28.47
GSMUA_Achr3P31090_001 Banana nucleus 32.92 28.27
CDY14559 Canola nucleus 33.74 27.99
CDY28566 Canola nucleus 29.22 27.84
CDX85886 Canola nucleus 33.33 27.55
VIT_18s0001g12580.t01 Wine grape nucleus 35.8 27.53
CDY44079 Canola nucleus 28.81 27.45
CDX73152 Canola nucleus 33.74 27.42
CDY01760 Canola nucleus 28.81 27.34
CDX85059 Canola nucleus 26.75 27.31
CDX68137 Canola nucleus 33.33 27.27
CDY09363 Canola nucleus 32.92 26.85
CDY41692 Canola nucleus 32.92 26.67
CDY00104 Canola nucleus 34.16 26.6
GSMUA_Achr10P... Banana nucleus 28.4 26.04
GSMUA_Achr8P27010_001 Banana nucleus 34.16 25.86
CDY56033 Canola nucleus 29.22 25.63
CDX74428 Canola nucleus 33.33 25.55
GSMUA_Achr2P23010_001 Banana nucleus 30.04 25.09
CDY53549 Canola nucleus 32.1 24.84
CDX81638 Canola nucleus 32.1 24.76
CDY45257 Canola nucleus 31.69 24.76
CDX85230 Canola nucleus 34.16 24.48
CDX86403 Canola nucleus 34.57 24.42
CDY39311 Canola nucleus 30.04 23.86
GSMUA_Achr4P14910_001 Banana nucleus 32.1 23.64
GSMUA_Achr4P07850_001 Banana nucleus 32.1 23.57
GSMUA_Achr7P25600_001 Banana nucleus 32.92 23.05
OQU78488 Sorghum plastid 33.33 21.72
GSMUA_Achr6P27240_001 Banana plastid 33.33 21.09
GSMUA_Achr6P22120_001 Banana nucleus 33.33 20.35
GSMUA_Achr6P24230_001 Banana nucleus 18.11 19.73
Zm00001d017784_P001 Maize nucleus 32.1 18.7
KXG30914 Sorghum nucleus 30.86 18.47
GSMUA_Achr3P19060_001 Banana nucleus 18.11 18.33
Os02t0706600-00 Rice nucleus 31.28 17.8
Zm00001d051573_P001 Maize nucleus 32.51 17.71
TraesCS6A01G273700.1 Wheat nucleus 32.92 17.2
TraesCS6D01G253700.1 Wheat nucleus 32.92 17.2
TraesCS6B01G301000.1 Wheat nucleus 32.51 17.14
HORVU6Hr1G069090.1 Barley nucleus 29.22 15.4
HORVU6Hr1G069070.1 Barley plastid 11.11 9.61
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13GO:A0A078DQF8EnsemblPlants:CDX90679ProteinID:CDX90679ProteinID:CDX90679.1
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00151336001InterPro:Homeobox-like_sf
InterPro:Homeobox_domInterPro:Homeodomain_ZF_HDInterPro:IPR001356InterPro:IPR006456PFAM:PD125774PFAM:PF04770
PFscan:PS50071PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF9SUPFAM:SSF46689TIGRFAMs:TIGR01565
TIGRFAMs:TIGR01566UniParc:UPI0004EE1366InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg::
Description
BnaA03g41020D
Coordinates
chrLK031863:-:1457984..1458793
Molecular Weight (calculated)
27561.9 Da
IEP (calculated)
10.301
GRAVY (calculated)
-1.064
Length
243 amino acids
Sequence
(BLAST)
001: MEHGGNCNAI TSTTITLKAK PNTNPDPKTK PGSDSFLIKK ENQKPRTRSN QAAKYEECQK NHAALTGGHV VDGCCEFMPG GEEGTSGALK CAACNCHRSF
101: HRKEVYGHRN STQEELISPT FYRSSNSYKA IQPRGVYPTG EIGRRTSSSS EDMKKILNQN SDGKGLMMIT RKKKRVRTKI NEGQKKKMKE FAERLGWSIQ
201: KKDEEEIDKF CRTVNLRRQV FKVWMHNNKQ AMKRNGNICD LQN
Best Arabidopsis Sequence Match ( AT3G50890.1 )
(BLAST)
001: MELGGKCNAI TTTTMISTEV KPHTDPEPEA KPESDPSMAL FPIKKENQKP KTRVDQGAKY RECQKNHAAS TGGHVVDGCC EFMAGGEEGT LGALKCAACN
101: CHRSFHRKEV YGHRNSKQDH QLMITPAFYS SNSSYKPRVM HPTGEIGRRT SSSSEDMKKI LSHRNQNVDG KSLMMMMMRK KKRVRTKINE EQKEKMKEFA
201: ERLGWRMQKK DEEEIDKFCR MVNLRRQVFK VWMHNNKQAM KRNNSNISE
Arabidopsis Description
ZHD7ZHD7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL56]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.