Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 6
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74660.1 | CDX69541 | AT5G15210.1 | 21245844 |
| AT1G74660.1 | CDX85059 | AT5G15210.1 | 21245844 |
| AT1G74660.1 | CDX74428 | AT5G39760.1 | 21245844 |
| AT1G74660.1 | CDY56033 | AT5G39760.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96558 | Canola | mitochondrion | 96.81 | 96.81 |
| AT1G74660.1 | Thale cress | mitochondrion | 91.49 | 84.31 |
| CDX68172 | Canola | mitochondrion | 85.11 | 82.47 |
| CDX85849 | Canola | mitochondrion | 85.11 | 82.47 |
| CDY21695 | Canola | mitochondrion | 76.6 | 81.82 |
| CDY19248 | Canola | mitochondrion | 76.6 | 81.82 |
| CDY26722 | Canola | mitochondrion | 76.6 | 81.82 |
| CDX81897 | Canola | mitochondrion | 76.6 | 81.82 |
| CDX96695 | Canola | mitochondrion | 74.47 | 79.55 |
| CDX83807 | Canola | mitochondrion | 74.47 | 79.55 |
| CDX86404 | Canola | mitochondrion | 57.45 | 59.34 |
| CDX85228 | Canola | mitochondrion, nucleus | 57.45 | 59.34 |
| CDY20009 | Canola | mitochondrion | 59.57 | 57.14 |
| CDY00105 | Canola | mitochondrion | 59.57 | 57.14 |
| CDY46298 | Canola | cytosol | 21.28 | 23.81 |
| CDY03431 | Canola | nucleus | 46.81 | 19.73 |
| CDY24844 | Canola | nucleus | 43.62 | 19.52 |
| CDY08945 | Canola | nucleus | 43.62 | 19.52 |
| CDX88950 | Canola | nucleus | 43.62 | 19.52 |
| CDY34299 | Canola | nucleus | 45.74 | 19.11 |
| CDX77960 | Canola | nucleus | 42.55 | 18.26 |
| CDY54719 | Canola | nucleus | 46.81 | 18.26 |
| CDX73775 | Canola | nucleus | 41.49 | 18.14 |
| CDX81284 | Canola | nucleus | 46.81 | 17.25 |
| CDY37252 | Canola | nucleus | 45.74 | 16.48 |
| CDX90679 | Canola | nucleus | 42.55 | 16.46 |
| CDY62531 | Canola | nucleus | 45.74 | 16.35 |
| CDY28987 | Canola | nucleus | 42.55 | 16.33 |
| CDY70108 | Canola | nucleus | 45.74 | 16.23 |
| CDY70550 | Canola | nucleus | 43.62 | 15.95 |
| CDY69628 | Canola | nucleus | 29.79 | 15.64 |
| CDX88760 | Canola | nucleus | 29.79 | 15.47 |
| CDY37827 | Canola | nucleus | 44.68 | 15.44 |
| CDY33960 | Canola | nucleus | 43.62 | 15.24 |
| CDY71124 | Canola | nucleus | 41.49 | 15.18 |
| CDX95914 | Canola | nucleus | 37.23 | 15.15 |
| CDY45419 | Canola | nucleus | 45.74 | 14.93 |
| CDY14559 | Canola | nucleus | 45.74 | 14.68 |
| CDX73152 | Canola | nucleus | 45.74 | 14.38 |
| CDY44079 | Canola | nucleus | 38.3 | 14.12 |
| CDY28566 | Canola | nucleus | 38.3 | 14.12 |
| CDY01760 | Canola | nucleus | 38.3 | 14.06 |
| CDX85886 | Canola | nucleus | 43.62 | 13.95 |
| CDX68137 | Canola | nucleus | 43.62 | 13.8 |
| CDY09363 | Canola | nucleus | 43.62 | 13.76 |
| CDY41692 | Canola | nucleus | 43.62 | 13.67 |
| CDY53549 | Canola | nucleus | 43.62 | 13.06 |
| CDX81638 | Canola | nucleus | 43.62 | 13.02 |
| CDY56033 | Canola | nucleus | 38.3 | 13.0 |
| CDX69541 | Canola | nucleus | 36.17 | 12.93 |
| CDY20008 | Canola | nucleus | 38.3 | 12.81 |
| CDY39311 | Canola | nucleus | 41.49 | 12.75 |
| CDY45257 | Canola | nucleus | 41.49 | 12.54 |
| CDY00104 | Canola | nucleus | 39.36 | 11.86 |
| CDX74428 | Canola | nucleus | 38.3 | 11.36 |
| CDX85230 | Canola | nucleus | 40.43 | 11.21 |
| CDX86403 | Canola | nucleus | 40.43 | 11.05 |
| CDX85059 | Canola | nucleus | 19.15 | 7.56 |
Protein Annotations
| EnsemblPlants:CDX73105 | EnsemblPlantsGene:GSBRNA2T00103573001 | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF7 |
| PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | ProteinID:CDX73105 | ProteinID:CDX73105.1 | SEG:seg |
| TIGRFAMs:TIGR01566 | UniParc:UPI0004EEA316 | MapMan:15.5.3.13 | : | : | : |
Description
BnaC06g35530D
Coordinates
chrLK031797:-:2143272..2143556
Molecular Weight (calculated)
10418.3 Da
IEP (calculated)
8.611
GRAVY (calculated)
-0.629
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MKRQMVIKQK SRKSNTSSWT TTSSAISNIR YVECQKNHAA NIGGYAVDGC REFMASGNEG TVEALRCAAC GCHRNFHRKE VDTEVVCEYS PPNA
001: MMKKRQMVIK QRSRNSNTSS SWTTTSSSSS SSEISNVRYV ECQKNHAANI GGYAVDGCRE FMAAGVEGTV DALRCAACGC HRNFHRKEVD TEVVCEYSPP
101: NA
101: NA
Arabidopsis Description
MIF1Mini zinc finger protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA51]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.