CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69541
CDX73152
CDX74428
CDX81284
CDX81638
CDX85059
CDX85230
CDX86403
CDX95914
CDY00104
CDY01760
CDY14559
CDY20008
CDY28566
CDY33960
CDY37252
CDY37827
CDY39311
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50890.1	CDX81638	AT1G14440.1	16428600
AT3G50890.1	CDY39311	AT1G14440.1	16428600
AT3G50890.1	CDY45257	AT1G14440.1	16428600
AT3G50890.1	CDY53549	AT1G14440.1	16428600
AT3G50890.1	CDX95914	AT1G69600.1	16428600
AT3G50890.1	CDY01760	AT1G69600.1	16428600
AT3G50890.1	CDY28566	AT1G69600.1	16428600
AT3G50890.1	CDY44079	AT1G69600.1	16428600
AT3G50890.1	CDX73152	AT1G75240.1	16428600
AT3G50890.1	CDY37252	AT1G75240.1	16428600
AT3G50890.1	CDY45419	AT1G75240.1	16428600
AT3G50890.1	CDY62531	AT1G75240.1	16428600
AT3G50890.1	CDX85230	AT3G28920.1	16428600
AT3G50890.1	CDX86403	AT3G28920.1	16428600
AT3G50890.1	CDY00104	AT3G28920.1	16428600
AT3G50890.1	CDY20008	AT3G28920.1	16428600
AT3G50890.1	CDX69541	AT5G15210.1	16428600
AT3G50890.1	CDX85059	AT5G15210.1	16428600
AT3G50890.1	CDX74428	AT5G39760.1	16428600
AT3G50890.1	CDY56033	AT5G39760.1	16428600
AT3G50890.1	CDX81284	AT5G65410.1	16428600
AT3G50890.1	CDY14559	AT5G65410.1	16428600
AT3G50890.1	CDY33960	AT5G65410.1	16428600
AT3G50890.1	CDY37827	AT5G65410.1	16428600
AT3G50890.1	CDY54719	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036852.1-P	Field mustard	nucleus	100.0	100.0
CDX73775	Canola	nucleus	92.24	93.95
CDX90679	Canola	nucleus	75.34	67.9
CDY28987	Canola	nucleus	75.8	67.76
AT3G50890.1	Thale cress	nucleus	72.15	63.45
CDY21695	Canola	mitochondrion	19.18	47.73
CDX81897	Canola	mitochondrion	18.72	46.59
CDY19248	Canola	mitochondrion	18.26	45.45
CDX83807	Canola	mitochondrion	18.26	45.45
CDY26722	Canola	mitochondrion	18.26	45.45
CDX96695	Canola	mitochondrion	17.81	44.32
CDX73105	Canola	mitochondrion	18.26	42.55
CDX85228	Canola	mitochondrion, nucleus	17.35	41.76
CDX86404	Canola	mitochondrion	17.35	41.76
CDX96558	Canola	mitochondrion	17.81	41.49
CDX68172	Canola	mitochondrion	18.26	41.24
CDX85849	Canola	mitochondrion	18.26	41.24
CDY08945	Canola	nucleus	37.9	39.52
CDY20009	Canola	mitochondrion	17.35	38.78
CDY00105	Canola	mitochondrion	17.35	38.78
CDY24844	Canola	nucleus	36.99	38.57
CDX88950	Canola	nucleus	36.99	38.57
CDY03431	Canola	nucleus	38.81	38.12
CDY34299	Canola	nucleus	38.36	37.33
CDX88760	Canola	nucleus	27.85	33.7
CDY54719	Canola	nucleus	36.07	32.78
CDY70550	Canola	nucleus	38.36	32.68
CDY69628	Canola	nucleus	26.48	32.4
CDX81284	Canola	nucleus	36.99	31.76
CDY70108	Canola	nucleus	38.36	31.7
CDY37252	Canola	nucleus	37.44	31.42
CDY62531	Canola	nucleus	37.44	31.18
Zm00001d009674_P001	Maize	nucleus	33.33	30.54
CDX69541	Canola	nucleus	36.53	30.42
CDY37827	Canola	nucleus	37.44	30.15
CDY33960	Canola	nucleus	36.99	30.11
CDY71124	Canola	nucleus	35.16	29.96
TraesCS3B01G258400.1	Wheat	nucleus	31.51	29.74
CDX95914	Canola	nucleus	31.05	29.44
Os05t0579300-01	Rice	nucleus	34.25	29.41
TraesCS3A01G226100.1	Wheat	nucleus	31.05	28.94
TraesCS1A01G418600.1	Wheat	nucleus	29.68	28.89
Os01t0635550-00	Rice	nucleus	30.59	28.88
TraesCS3D01G224100.1	Wheat	nucleus	31.05	28.81
PGSC0003DMT400009581	Potato	nucleus	36.99	28.52
CDY20008	Canola	nucleus	36.53	28.47
HORVU1Hr1G091470.1	Barley	nucleus	30.14	28.09
Solyc04g080490.2.1	Tomato	nucleus	36.99	27.93
CDY45419	Canola	nucleus	36.53	27.78
CDY14559	Canola	nucleus	36.99	27.65
GSMUA_Achr3P31090_001	Banana	nucleus	35.62	27.56
CDX85886	Canola	nucleus	36.99	27.55
CDX85059	Canola	nucleus	29.68	27.31
CDX68137	Canola	nucleus	36.99	27.27
CDY09363	Canola	nucleus	36.99	27.18
CDY44079	Canola	nucleus	31.51	27.06
CDY28566	Canola	nucleus	31.51	27.06
CDY41692	Canola	nucleus	36.99	27.0
CDY01760	Canola	nucleus	31.51	26.95
CDY00104	Canola	nucleus	37.9	26.6
CDX73152	Canola	nucleus	36.07	26.42
GSMUA_Achr10P...	Banana	nucleus	31.96	26.42
TraesCS1B01G448600.1	Wheat	nucleus	30.14	26.19
TraesCS1D01G426300.1	Wheat	nucleus	29.68	26.0
CDY56033	Canola	nucleus	32.88	25.99
CDX74428	Canola	nucleus	37.44	25.87
VIT_18s0001g12580.t01	Wine grape	nucleus	36.53	25.32
GSMUA_Achr8P27010_001	Banana	nucleus	36.99	25.23
CDY46298	Canola	cytosol	9.59	25.0
GSMUA_Achr2P23010_001	Banana	nucleus	32.88	24.74
CDX85230	Canola	nucleus	37.9	24.48
CDX86403	Canola	nucleus	38.36	24.42
CDY53549	Canola	nucleus	34.25	23.89
CDX81638	Canola	nucleus	34.25	23.81
CDY45257	Canola	nucleus	33.79	23.79
GSMUA_Achr4P07850_001	Banana	nucleus	35.16	23.26
CDY39311	Canola	nucleus	31.51	22.55
GSMUA_Achr7P25600_001	Banana	nucleus	35.62	22.48
GSMUA_Achr4P14910_001	Banana	nucleus	33.33	22.12
OQU78488	Sorghum	plastid	34.7	20.38
GSMUA_Achr6P27240_001	Banana	plastid	35.16	20.05
GSMUA_Achr6P22120_001	Banana	nucleus	35.62	19.6
GSMUA_Achr6P24230_001	Banana	nucleus	19.18	18.83
Os02t0706600-00	Rice	nucleus	36.07	18.5
Zm00001d017784_P001	Maize	nucleus	33.79	17.75
KXG30914	Sorghum	nucleus	32.42	17.49
GSMUA_Achr3P19060_001	Banana	nucleus	18.72	17.08
Zm00001d051573_P001	Maize	nucleus	32.88	16.14
TraesCS6A01G273700.1	Wheat	nucleus	34.25	16.13
TraesCS6D01G253700.1	Wheat	nucleus	34.25	16.13
TraesCS6B01G301000.1	Wheat	nucleus	33.79	16.05
HORVU6Hr1G069090.1	Barley	nucleus	31.05	14.75
HORVU6Hr1G069070.1	Barley	plastid	10.5	8.19

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	GO:A0A078CM14	EnsemblPlants:CDX77960	ProteinID:CDX77960	ProteinID:CDX77960.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00129223001	InterPro:Homeobox-like_sf
InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF9	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002542BF9	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

BnaA09g31550D

Coordinates

chrLK031814:+:297855..298514

Molecular Weight (calculated)

25078.4 Da

IEP (calculated)

10.198

GRAVY (calculated)

-0.887

Length

219 amino acids

Sequence
(BLAST)

001: MEHGGKCNAI ATTTKISTKI LEAKPHTNSY PKAKPGLDPT LPPFLVKKEN HKPSSRGDQE TKYKECQKNH AVSTGGHVVD GCCEFMPGGE EGTLGALKCA
101: ACSCHRSFHR KEVYEHINST QELMSPAFYR SGSLYKAMIQ PRGLYLPKKK RIRTKINEEQ KEKMKEFAER LGWRILKKDE EEINKFCRLV NLRRQVFKVW
201: MHNNKQAMKR NGNACNLQK

Best Arabidopsis Sequence Match ( AT3G50890.1 )
(BLAST)

001: MELGGKCNAI TTTTMISTEV KPHTDPEPEA KPESDPSMAL FPIKKENQKP KTRVDQGAKY RECQKNHAAS TGGHVVDGCC EFMAGGEEGT LGALKCAACN
101: CHRSFHRKEV YGHRNSKQDH QLMITPAFYS SNSSYKPRVM HPTGEIGRRT SSSSEDMKKI LSHRNQNVDG KSLMMMMMRK KKRVRTKINE EQKEKMKEFA
201: ERLGWRMQKK DEEEIDKFCR MVNLRRQVFK VWMHNNKQAM KRNNSNISE

Arabidopsis Description

ZHD7ZHD7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.