Factsheet for VIT_18s0001g12580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00250.t01
VIT_01s0026g02460.t01
VIT_12s0035g01880.t01
VIT_14s0108g00750.t01
VIT_18s0001g12580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	VIT_12s0035g01880.t01	AT1G14440.1	16428600
AT1G75240.1	VIT_18s0001g12580.t01	AT1G75240.1	16428600
AT1G75240.1	VIT_14s0108g00750.t01	AT3G28920.1	16428600
AT1G75240.1	VIT_18s0001g12580.t01	AT3G50890.1	16428600
AT1G75240.1	VIT_01s0026g02460.t01	AT5G15210.1	16428600
AT1G75240.1	VIT_14s0108g00750.t01	AT5G39760.1	16428600
AT1G75240.1	VIT_00s0199g00250.t01	AT5G65410.1	16428600
AT2G18350.1	VIT_12s0035g01880.t01	AT1G14440.1	16428600
AT2G18350.1	VIT_14s0108g00750.t01	AT3G28920.1	16428600
AT2G18350.1	VIT_14s0108g00750.t01	AT5G39760.1	16428600
AT2G18350.1	VIT_00s0199g00250.t01	AT5G65410.1	16428600
AT3G50890.1	VIT_12s0035g01880.t01	AT1G14440.1	16428600
AT3G50890.1	VIT_18s0001g12580.t01	AT1G75240.1	16428600
AT3G50890.1	VIT_14s0108g00750.t01	AT3G28920.1	16428600
AT3G50890.1	VIT_01s0026g02460.t01	AT5G15210.1	16428600
AT3G50890.1	VIT_14s0108g00750.t01	AT5G39760.1	16428600
AT3G50890.1	VIT_00s0199g00250.t01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06200.t01	Wine grape	cytosol	9.49	61.22
VIT_01s0026g02450.t01	Wine grape	cytosol	12.66	47.06
VIT_18s0001g07140.t01	Wine grape	nucleus	33.86	46.52
VIT_14s0108g00760.t01	Wine grape	mitochondrion	13.61	45.26
VIT_17s0000g00810.t01	Wine grape	nucleus	22.15	45.16
PGSC0003DMT400009581	Potato	nucleus	39.87	44.37
Solyc04g080490.2.1	Tomato	nucleus	39.56	43.1
CDY37252	Canola	nucleus	34.81	42.15
CDY62531	Canola	nucleus	34.81	41.83
VIT_00s0199g00250.t01	Wine grape	nucleus	32.28	41.8
VIT_12s0035g01880.t01	Wine grape	nucleus	35.13	39.5
TraesCS1A01G418600.1	Wheat	nucleus	27.85	39.11
HORVU1Hr1G091470.1	Barley	nucleus	28.16	37.87
Os01t0635550-00	Rice	nucleus	27.53	37.5
CDY45419	Canola	nucleus	34.18	37.5
CDX85886	Canola	nucleus	34.49	37.07
Bra008185.1-P	Field mustard	nucleus	34.49	37.07
CDX73775	Canola	nucleus	25.0	36.74
CDX77960	Canola	nucleus	25.32	36.53
Bra036852.1-P	Field mustard	nucleus	25.32	36.53
CDX73152	Canola	nucleus	34.49	36.45
Bra015857.1-P	Field mustard	nucleus	34.81	36.42
CDY70550	Canola	nucleus	29.43	36.19
AT3G50890.1	Thale cress	nucleus	28.48	36.14
CDX90679	Canola	nucleus	27.53	35.8
TraesCS3B01G258400.1	Wheat	nucleus	26.27	35.78
Zm00001d009674_P001	Maize	nucleus	26.9	35.56
AT2G18350.1	Thale cress	nucleus	29.43	35.5
CDY70108	Canola	nucleus	29.75	35.47
Bra037224.1-P	Field mustard	nucleus	29.75	35.47
Bra003759.1-P	Field mustard	nucleus	32.91	35.37
CDX68137	Canola	nucleus	33.23	35.35
Os05t0579300-01	Rice	nucleus	28.48	35.29
TraesCS1D01G426300.1	Wheat	nucleus	27.85	35.2
TraesCS3D01G224100.1	Wheat	nucleus	26.27	35.17
TraesCS1B01G448600.1	Wheat	nucleus	27.85	34.92
VIT_07s0130g00240.t01	Wine grape	nucleus	21.84	34.85
CDY28987	Canola	nucleus	26.9	34.69
TraesCS3A01G226100.1	Wheat	nucleus	25.63	34.47
AT1G75240.1	Thale cress	nucleus	33.54	34.3
CDY71124	Canola	nucleus	27.53	33.85
VIT_18s0117g00270.t01	Wine grape	nucleus	28.8	33.46
VIT_14s0108g00810.t01	Wine grape	cytosol	13.29	32.56
GSMUA_Achr10P...	Banana	nucleus	26.58	31.7
GSMUA_Achr2P23010_001	Banana	nucleus	28.8	31.27
VIT_08s0056g01130.t01	Wine grape	nucleus	13.29	31.11
GSMUA_Achr3P31090_001	Banana	nucleus	26.9	30.04
GSMUA_Achr8P27010_001	Banana	nucleus	30.38	29.91
Bra012882.1-P	Field mustard	nucleus	24.05	28.68
GSMUA_Achr7P25600_001	Banana	nucleus	30.38	27.67
VIT_04s0023g01880.t01	Wine grape	nucleus	36.71	26.79
GSMUA_Achr4P14910_001	Banana	nucleus	27.85	26.67
VIT_01s0026g02460.t01	Wine grape	nucleus	19.3	26.52
VIT_10s0042g00210.t01	Wine grape	nucleus	16.77	26.37
GSMUA_Achr4P07850_001	Banana	nucleus	27.22	25.98
VIT_14s0108g00750.t01	Wine grape	nucleus	28.8	25.63
GSMUA_Achr6P22120_001	Banana	nucleus	31.01	24.62
GSMUA_Achr6P27240_001	Banana	plastid	29.75	24.48
GSMUA_Achr6P24230_001	Banana	nucleus	17.09	24.22
GSMUA_Achr3P19060_001	Banana	nucleus	18.35	24.17
OQU78488	Sorghum	plastid	28.16	23.86
KXG30914	Sorghum	nucleus	29.43	22.91
TraesCS6A01G273700.1	Wheat	nucleus	33.23	22.58
Os02t0706600-00	Rice	nucleus	30.38	22.48
TraesCS6D01G253700.1	Wheat	nucleus	32.91	22.37
TraesCS6B01G301000.1	Wheat	nucleus	32.59	22.34
Zm00001d017784_P001	Maize	nucleus	29.11	22.06
Zm00001d051573_P001	Maize	nucleus	30.7	21.75
HORVU6Hr1G069090.1	Barley	nucleus	31.33	21.48
HORVU6Hr1G069070.1	Barley	plastid	12.03	13.52

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100247227	wikigene:100247227	MapMan:15.5.3.13	ProteinID:CCB45951	ProteinID:CCB45951.1
UniProt:F6H049	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:Homeodomain_ZF_HD	InterPro:IPR001356	InterPro:IPR006456	EntrezGene:LOC100247227	wikigene:LOC100247227	PFAM:PD125774
PFAM:PF04770	PFscan:PS50071	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF43	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000198549D	ArrayExpress:VIT_18s0001g12580	EnsemblPlantsGene:VIT_18s0001g12580	EnsemblPlants:VIT_18s0001g12580.t01
unigene:Vvi.21918	RefSeq:XP_002281371	RefSeq:XP_002281371.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:10783056..10784230

Molecular Weight (calculated)

34377.6 Da

IEP (calculated)

7.194

GRAVY (calculated)

-0.730

Length

316 amino acids

Sequence
(BLAST)

001: MELSKEMGFP PSSGYNPLAS AGSGGGGDDH HNIDNGTTVF KPPQIPHHHP LLQQQQELNP QQQSLGQGCD PDPDPDPDPV HVAGVLAGAT IASTIGGSNS
101: KASVRYRECL KNHAANIGGN VVDGCGEFMP DGEEGTLEAL MCAACNCHRN FHRKEVDGET IGRSAPHFHP LPPTLASPPY LHRQKFPKAF HAPPSTIIIP
201: PMSMAFGTSI GATESSSEDL RAFDSNAGAA PPPPPPPPPS SLSKKRFRTK FTQEQKEKML EYAEKVGWRM QKQYEEQVQQ LCAEVGVKRQ VFKVWMHNNK
301: NTLKKQPQPQ QQPPPL

Best Arabidopsis Sequence Match ( AT1G75240.1 )
(BLAST)

001: MDMRSHEMIE RRREDNGNNN GGVVISNIIS TNIDDNCNGN NNNTRVSCNS QTLDHHQSKS PSSFSISAAA KPTVRYRECL KNHAASVGGS VHDGCGEFMP
101: SGEEGTIEAL RCAACDCHRN FHRKEMDGVG SSDLISHHRH HHYHHNQYGG GGGRRPPPPN MMLNPLMLPP PPNYQPIHHH KYGMSPPGGG GMVTPMSVAY
201: GGGGGGAESS SEDLNLYGQS SGEGAGAAAG QMAFSMSSSK KRFRTKFTTD QKERMMDFAE KLGWRMNKQD EEELKRFCGE IGVKRQVFKV WMHNNKNNAK
301: KPPTPTTTL

Arabidopsis Description

ZHD5ZHD5 [Source:UniProtKB/TrEMBL;Acc:A0A178WFZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.