Factsheet for GSMUA_Achr4P07850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P13300_001
GSMUA_Achr2P23010_001
GSMUA_Achr3P16680_001
GSMUA_Achr3P19060_001
GSMUA_Achr3P20390_001
GSMUA_Achr3P31090_001
GSMUA_Achr4P07850_001
GSMUA_Achr4P14910_001
GSMUA_Achr5P05500_001
GSMUA_Achr6P02170_001
GSMUA_Achr6P02700_001
GSMUA_Achr6P17420_001
GSMUA_Achr6P22120_001
GSMUA_Achr6P24230_001
GSMUA_Achr6P27240_001
GSMUA_Achr6P28870_001
GSMUA_Achr7P19060_001
GSMUA_Achr7P25600_001
GSMUA_Achr8P27010_001
GSMUA_Achr9P08090_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_AchrUn_...	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P31090_001	Banana	nucleus	58.01	67.84
GSMUA_Achr7P25600_001	Banana	nucleus	66.47	63.4
GSMUA_Achr4P14910_001	Banana	nucleus	53.17	53.33
GSMUA_Achr8P27010_001	Banana	nucleus	48.64	50.16
GSMUA_Achr7P19060_001	Banana	nucleus	29.31	47.09
GSMUA_Achr6P17420_001	Banana	nucleus	28.7	45.89
GSMUA_Achr6P28870_001	Banana	nucleus	30.21	44.25
GSMUA_Achr3P20390_001	Banana	nucleus	27.49	43.96
GSMUA_Achr10P...	Banana	nucleus	35.05	43.77
GSMUA_Achr10P...	Banana	nucleus	31.42	42.98
GSMUA_Achr1P13300_001	Banana	nucleus	29.31	42.92
GSMUA_Achr6P22120_001	Banana	nucleus	50.45	41.96
GSMUA_Achr10P...	Banana	nucleus	29.0	41.92
GSMUA_Achr9P08090_001	Banana	nucleus	30.51	41.91
GSMUA_Achr3P16680_001	Banana	nucleus	29.0	41.2
GSMUA_Achr2P23010_001	Banana	nucleus	35.35	40.21
GSMUA_Achr6P02170_001	Banana	nucleus	27.79	39.83
GSMUA_Achr6P27240_001	Banana	plastid	45.62	39.32
GSMUA_Achr5P05500_001	Banana	nucleus	28.1	39.08
GSMUA_AchrUn_...	Banana	cytosol	10.57	37.63
GSMUA_Achr6P30650_001	Banana	mitochondrion	10.57	36.84
GSMUA_AchrUn_...	Banana	nucleus	26.89	35.6
CDX77960	Canola	nucleus	23.26	35.16
Bra036852.1-P	Field mustard	nucleus	23.26	35.16
CDX73775	Canola	nucleus	22.36	34.42
GSMUA_Achr6P02700_001	Banana	nucleus	23.87	33.19
CDY37252	Canola	nucleus	25.38	32.18
CDX90679	Canola	nucleus	23.57	32.1
CDY62531	Canola	nucleus	25.38	31.94
CDY28987	Canola	nucleus	23.26	31.43
PGSC0003DMT400009581	Potato	nucleus	26.59	30.99
AT3G50890.1	Thale cress	nucleus	23.26	30.92
CDY70550	Canola	nucleus	23.87	30.74
CDY70108	Canola	nucleus	24.47	30.57
Bra037224.1-P	Field mustard	nucleus	24.17	30.19
AT2G18350.1	Thale cress	nucleus	23.87	30.15
Solyc04g080490.2.1	Tomato	nucleus	26.28	30.0
CDY71124	Canola	nucleus	23.26	29.96
KRH76785	Soybean	nucleus	28.4	29.65
Bra003759.1-P	Field mustard	nucleus	25.98	29.25
CDX68137	Canola	nucleus	25.98	28.96
CDX85886	Canola	nucleus	25.68	28.91
KRH28682	Soybean	nucleus	29.31	28.87
CDY45419	Canola	nucleus	25.08	28.82
Bra008185.1-P	Field mustard	nucleus	25.38	28.57
Bra015857.1-P	Field mustard	nucleus	25.38	27.81
CDX73152	Canola	nucleus	25.08	27.76
GSMUA_Achr10P...	Banana	nucleus	21.75	27.59
VIT_18s0001g12580.t01	Wine grape	nucleus	25.98	27.22
AT1G75240.1	Thale cress	nucleus	25.38	27.18
KRH08258	Soybean	nucleus	26.28	26.44
Solyc02g085160.1.1	Tomato	nucleus	22.96	25.94
KRH69909	Soybean	nucleus	25.98	25.75
Bra012882.1-P	Field mustard	nucleus	20.54	25.66
PGSC0003DMT400009033	Potato	nucleus	23.26	25.5
GSMUA_Achr6P24230_001	Banana	nucleus	16.01	23.77
GSMUA_Achr3P19060_001	Banana	nucleus	16.92	23.33
VIT_04s0023g01880.t01	Wine grape	nucleus	26.89	20.55

Protein Annotations

EnsemblPlants:GSMUA_Achr4P07850_001	EnsemblPlants:GSMUA_Achr4T07850_001	EnsemblPlantsGene:GSMUA_Achr4G07850_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer
PANTHER:PTHR31948	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002963256	UniProt:M0SM02	MapMan:15.5.3.13	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G07850_001]

Coordinates

chr4:+:5835799..5836878

Molecular Weight (calculated)

35116.3 Da

IEP (calculated)

9.964

GRAVY (calculated)

-0.577

Length

331 amino acids

Sequence
(BLAST)

001: MEFRGPSEIR IPSSPPGYNT SLIRGGSAFS KPILPSASLV SPRGGGGVGA DGGGAGGAAN GNIFGNARAP PPTLEHTTTT MDHTPQSLTK NAGQDSIPNS
101: SPGAVAAGVS SHTKPAATTK TSSTIAATAT ISTRYGECLR NHAAAIGGHV VDGCGEFMPS GEPDTPEAFN CAACGCHRSF HRRDGDGGTN AAGPYYHSTT
201: RLPVLLPPPH PHHHQKQFHL SGFCSPSAAE RINAGAPTPA TMPRKRFRTK FTAEQKDKML AFAERAGWRI QRQDSAMVEQ FCAEIGVRRQ VLKVWMHNNK
301: HTVTRKRQQQ EELAVQQQQS QLPQPGSPLL H

Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.