Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P19060_001 | Banana | nucleus | 73.43 | 73.79 |
| GSMUA_Achr10P... | Banana | nucleus | 77.29 | 69.87 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 71.98 | 62.6 |
| Solyc04g074990.2.1 | Tomato | nucleus | 41.06 | 59.44 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 60.87 | 54.55 |
| VIT_18s0001g07140.t01 | Wine grape | nucleus | 59.42 | 53.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.35 | 50.8 |
| VIT_00s0199g00250.t01 | Wine grape | nucleus | 58.94 | 50.0 |
| Solyc05g051420.1.1 | Tomato | nucleus | 39.13 | 48.5 |
| PGSC0003DMT400084919 | Potato | nucleus | 40.58 | 48.0 |
| PGSC0003DMT400033624 | Potato | nucleus | 53.62 | 46.25 |
| KRH45571 | Soybean | cytosol, nucleus | 42.51 | 45.13 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 44.93 | 44.93 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 31.88 | 44.9 |
| KRH74513 | Soybean | nucleus | 55.07 | 44.88 |
| KRG99446 | Soybean | nucleus | 54.11 | 44.8 |
| KRH45573 | Soybean | nucleus | 41.55 | 43.43 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 47.34 | 43.36 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.32 | 43.01 |
| KRH45572 | Soybean | nucleus | 41.06 | 42.93 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 46.86 | 42.92 |
| GSMUA_Achr6P30650_001 | Banana | mitochondrion | 18.84 | 41.05 |
| GSMUA_Achr10P... | Banana | nucleus | 47.83 | 40.91 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 45.89 | 40.77 |
| KRG90215 | Soybean | cytosol | 41.55 | 40.57 |
| Solyc04g014260.1.1 | Tomato | nucleus | 47.34 | 39.68 |
| KRG90132 | Soybean | cytosol | 39.13 | 39.51 |
| PGSC0003DMT400060623 | Potato | nucleus | 46.38 | 39.51 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 45.89 | 39.42 |
| KRH69650 | Soybean | nucleus | 54.59 | 38.31 |
| CDY54719 | Canola | nucleus | 44.44 | 38.17 |
| Bra037816.1-P | Field mustard | nucleus | 44.44 | 38.02 |
| CDX81284 | Canola | nucleus | 45.41 | 36.86 |
| KRH45574 | Soybean | cytosol | 45.89 | 36.4 |
| CDY33960 | Canola | nucleus | 46.38 | 35.69 |
| KRH71953 | Soybean | nucleus | 43.96 | 35.55 |
| KRG90210 | Soybean | nucleus | 43.96 | 35.55 |
| CDY37827 | Canola | nucleus | 46.38 | 35.29 |
| Bra031859.1-P | Field mustard | nucleus | 46.38 | 35.29 |
| KRH71954 | Soybean | nucleus | 41.55 | 34.82 |
| AT5G65410.1 | Thale cress | nucleus | 46.86 | 34.77 |
| KRG90211 | Soybean | cytosol | 43.0 | 34.63 |
| KRG90213 | Soybean | nucleus | 42.51 | 34.51 |
| CDY14559 | Canola | nucleus | 48.31 | 34.13 |
| Bra024382.1-P | Field mustard | nucleus | 48.31 | 34.13 |
| GSMUA_Achr10P... | Banana | nucleus | 40.58 | 31.7 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 34.78 | 30.25 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 40.58 | 29.68 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 43.96 | 27.49 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 38.65 | 27.49 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 42.03 | 27.1 |
| GSMUA_Achr10P... | Banana | nucleus | 32.37 | 25.67 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 42.03 | 25.07 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 39.61 | 24.85 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 27.05 | 23.33 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 24.64 | 22.87 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 41.55 | 22.4 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 41.55 | 21.61 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr3G20390_001 | EnsemblPlants:GSMUA_Achr3P20390_001 | EnsemblPlants:GSMUA_Achr3T20390_001 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 |
| UniProt:M0SGA5 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF25 |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0002954FBB | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg |
Description
ZF-HD homeobox protein At4g24660 [Source:GMGC_GENE;Acc:GSMUA_Achr3G20390_001]
Coordinates
chr3:-:21539617..21541044
Molecular Weight (calculated)
22300.1 Da
IEP (calculated)
6.621
GRAVY (calculated)
-0.619
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDDHDEGD EEIGLPVGSS YDTVMENLGS GHRKAHGGGS GGGVRYRECL KNHAVGIGGH AVDGCREFMA AGEEGTLDAL SCAACGCHRN FHRKDSGGSG
101: AGGGAAGGGG AMEVTGYHPQ PSPLALPSTS GVGGHSREDH DDVFRTKFTQ EQKEKMLAFA ERLGWRIQKH DEAAVQQFCE ETCIKRHVLK VWMHNNKHTL
201: ALLWRRM
101: AGGGAAGGGG AMEVTGYHPQ PSPLALPSTS GVGGHSREDH DDVFRTKFTQ EQKEKMLAFA ERLGWRIQKH DEAAVQQFCE ETCIKRHVLK VWMHNNKHTL
201: ALLWRRM
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.