Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P19060_001 | Banana | nucleus | 66.39 | 76.7 |
| GSMUA_Achr10P... | Banana | nucleus | 73.53 | 76.42 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 62.6 | 71.98 |
| VIT_18s0001g07140.t01 | Wine grape | nucleus | 64.29 | 66.52 |
| Solyc04g074990.2.1 | Tomato | nucleus | 39.92 | 66.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 68.49 | 65.2 |
| VIT_00s0199g00250.t01 | Wine grape | nucleus | 59.66 | 58.2 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 56.3 | 58.01 |
| Os09t0466400-01 | Rice | nucleus | 65.13 | 55.56 |
| PGSC0003DMT400033624 | Potato | nucleus | 55.88 | 55.42 |
| Zm00001d020774_P001 | Maize | nucleus | 63.03 | 54.95 |
| KRH45571 | Soybean | cytosol, nucleus | 44.12 | 53.85 |
| PGSC0003DMT400084919 | Potato | nucleus | 39.08 | 53.14 |
| Zm00001d005931_P001 | Maize | nucleus | 63.45 | 52.8 |
| Solyc05g051420.1.1 | Tomato | nucleus | 36.97 | 52.69 |
| KRH45572 | Soybean | nucleus | 43.7 | 52.53 |
| KRH45573 | Soybean | nucleus | 43.7 | 52.53 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 64.29 | 51.69 |
| KRH74513 | Soybean | nucleus | 55.04 | 51.57 |
| EER96888 | Sorghum | nucleus | 65.13 | 51.32 |
| KRG99446 | Soybean | nucleus | 53.78 | 51.2 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 63.87 | 51.18 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 63.87 | 51.18 |
| HORVU5Hr1G069730.1 | Barley | nucleus | 63.03 | 49.67 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 30.67 | 49.66 |
| Solyc04g014260.1.1 | Tomato | nucleus | 48.74 | 46.96 |
| PGSC0003DMT400060623 | Potato | nucleus | 47.48 | 46.5 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.07 | 46.24 |
| KRH45574 | Soybean | cytosol | 49.16 | 44.83 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 38.66 | 44.44 |
| KRH69650 | Soybean | nucleus | 55.04 | 44.41 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 42.02 | 44.25 |
| KRG90215 | Soybean | cytosol | 39.08 | 43.87 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 41.18 | 43.36 |
| KRG90132 | Soybean | cytosol | 36.97 | 42.93 |
| CDY54719 | Canola | nucleus | 42.44 | 41.91 |
| GSMUA_Achr10P... | Banana | nucleus | 42.44 | 41.74 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 40.76 | 41.63 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 42.02 | 41.49 |
| Bra037816.1-P | Field mustard | nucleus | 42.02 | 41.32 |
| CDX81284 | Canola | nucleus | 43.28 | 40.39 |
| CDY33960 | Canola | nucleus | 44.96 | 39.78 |
| Bra031859.1-P | Field mustard | nucleus | 44.96 | 39.34 |
| CDY37827 | Canola | nucleus | 44.96 | 39.34 |
| AT5G65410.1 | Thale cress | nucleus | 45.38 | 38.71 |
| KRG90210 | Soybean | nucleus | 41.18 | 38.28 |
| KRH71953 | Soybean | nucleus | 41.18 | 38.28 |
| CDY14559 | Canola | nucleus | 47.06 | 38.23 |
| GSMUA_Achr6P30650_001 | Banana | mitochondrion | 15.13 | 37.89 |
| Bra024382.1-P | Field mustard | nucleus | 46.64 | 37.88 |
| KRG90211 | Soybean | cytosol | 39.92 | 36.97 |
| KRG90213 | Soybean | nucleus | 39.5 | 36.86 |
| KRH71954 | Soybean | nucleus | 37.82 | 36.44 |
| GSMUA_Achr10P... | Banana | nucleus | 36.55 | 32.83 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 37.82 | 31.8 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 31.51 | 31.51 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 39.92 | 29.59 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 39.08 | 28.1 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 33.61 | 27.49 |
| GSMUA_Achr10P... | Banana | nucleus | 29.83 | 27.2 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 39.5 | 27.09 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 37.4 | 26.97 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 24.37 | 26.01 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 25.63 | 25.42 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 39.08 | 24.22 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 38.24 | 22.86 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr5G05500_001 | EnsemblPlants:GSMUA_Achr5P05500_001 | EnsemblPlants:GSMUA_Achr5T05500_001 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 |
| UniProt:M0SVX9 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF25 |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI000294C8CC | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg |
Description
ZF-HD protein dimerisation region containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G05500_001]
Coordinates
chr5:+:4089043..4089912
Molecular Weight (calculated)
24821.1 Da
IEP (calculated)
7.850
GRAVY (calculated)
-0.644
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDDHDETE EEMGLPVGSS YETPMPNSPR GGGGARMGGG EGEAGGLGSG NRKVGGGAGG GRYRECLKNH AVGIGGHAVD GCGEFLAAGE DGTLDALRCA
101: ACSCHRNFHR KEAEGGEGGR GGGGALEVAG YHHQFSPFYR TAAGLLPLAL PSTGGGGGGY AAGGGMGASG SGSHRKRFRT KFTQDQKDKM LVFAERVGWR
201: IQKQDEAAVQ QFCDETCVKR HVLKVWMHNN KHTLGKKP
101: ACSCHRNFHR KEAEGGEGGR GGGGALEVAG YHHQFSPFYR TAAGLLPLAL PSTGGGGGGY AAGGGMGASG SGSHRKRFRT KFTQDQKDKM LVFAERVGWR
201: IQKQDEAAVQ QFCDETCVKR HVLKVWMHNN KHTLGKKP
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
Arabidopsis Description
ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.