Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g074990.2.1 | Tomato | nucleus | 57.08 | 95.8 |
| PGSC0003DMT400084919 | Potato | nucleus | 42.5 | 58.29 |
| GSMUA_Achr7P19060_001 | Banana | nucleus | 49.17 | 57.28 |
| VIT_00s0199g00250.t01 | Wine grape | nucleus | 57.92 | 56.97 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 55.42 | 55.88 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 33.33 | 54.42 |
| GSMUA_Achr10P... | Banana | nucleus | 51.67 | 54.15 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 46.25 | 53.62 |
| KRH74513 | Soybean | nucleus | 55.42 | 52.36 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 48.75 | 50.65 |
| PGSC0003DMT400060623 | Potato | nucleus | 50.42 | 49.79 |
| Zm00001d020774_P001 | Maize | nucleus | 55.42 | 48.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.0 | 48.0 |
| Os09t0466400-01 | Rice | nucleus | 55.0 | 47.31 |
| PGSC0003DMT400050286 | Potato | mitochondrion | 15.83 | 45.78 |
| KRH69650 | Soybean | nucleus | 55.0 | 44.75 |
| Os08t0479400-01 | Rice | nucleus | 53.75 | 44.48 |
| Zm00001d005931_P001 | Maize | nucleus | 52.92 | 44.41 |
| EER96888 | Sorghum | nucleus | 55.83 | 44.37 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 52.5 | 42.57 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 52.08 | 42.09 |
| HORVU5Hr1G069730.1 | Barley | nucleus | 52.92 | 42.05 |
| EES15144 | Sorghum | nucleus | 54.17 | 41.8 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 51.25 | 41.41 |
| PGSC0003DMT400083993 | Potato | nucleus | 30.83 | 41.34 |
| Zm00001d031840_P001 | Maize | nucleus | 52.92 | 41.23 |
| PGSC0003DMT400053397 | Potato | nucleus | 42.92 | 35.89 |
| PGSC0003DMT400009581 | Potato | nucleus | 40.0 | 33.8 |
| PGSC0003DMT400090846 | Potato | cytosol | 15.42 | 30.58 |
| PGSC0003DMT400086860 | Potato | cytosol | 14.58 | 29.41 |
| PGSC0003DMT400035635 | Potato | nucleus | 37.5 | 29.32 |
| PGSC0003DMT400034368 | Potato | nucleus | 40.83 | 28.32 |
| PGSC0003DMT400017840 | Potato | nucleus | 38.75 | 28.27 |
| PGSC0003DMT400080288 | Potato | nucleus | 32.08 | 26.83 |
| PGSC0003DMT400009033 | Potato | nucleus | 33.33 | 26.49 |
| PGSC0003DMT400044269 | Potato | nucleus | 27.08 | 15.51 |
| PGSC0003DMT400044270 | Potato | cytosol | 28.75 | 8.52 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102589921 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | UniProt:M1AZE8 | PFAM:PD125774 |
| PFAM:PF04770 | EnsemblPlantsGene:PGSC0003DMG400012913 | PGSC:PGSC0003DMG400012913 | EnsemblPlants:PGSC0003DMT400033624 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF44 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI000295CCD8 | RefSeq:XP_006338094.1 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : | : |
Description
Zinc finger homeodomain protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012913]
Coordinates
chr4:+:64606601..64607912
Molecular Weight (calculated)
26734.1 Da
IEP (calculated)
7.521
GRAVY (calculated)
-0.963
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFDEDHEEQ EQEIGAAGVE NYVTTGNNSG REEGISPSSI GRKSNVRYRE CLKNHAVGIG GHALDGCGEF MPAGEEGTMD ALKCAACNCH RNFHRKEAEG
101: EVFHHTPPPH LTHHHHPQFS PFSSYRTTHH PSGYLHVNQL PHQRPLALPS TSRDDEDMSN PSSSGGGGGS GGVGGSRKRF RTKFTGDQKD KMLAFAERLG
201: WRMQKQDEAL VQQFCAETNI KRHVFKVWMH NNKHTLGKKP
101: EVFHHTPPPH LTHHHHPQFS PFSSYRTTHH PSGYLHVNQL PHQRPLALPS TSRDDEDMSN PSSSGGGGGS GGVGGSRKRF RTKFTGDQKD KMLAFAERLG
201: WRMQKQDEAL VQQFCAETNI KRHVFKVWMH NNKHTLGKKP
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.