Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017840 | Potato | nucleus | 63.84 | 59.57 |
| PGSC0003DMT400034368 | Potato | nucleus | 63.52 | 56.36 |
| CDY56033 | Canola | nucleus | 44.95 | 49.82 |
| KRH18475 | Soybean | nucleus | 53.09 | 49.24 |
| Bra039038.1-P | Field mustard | nucleus | 49.51 | 49.19 |
| CDY20008 | Canola | nucleus | 44.63 | 48.75 |
| Bra025644.1-P | Field mustard | nucleus | 50.16 | 48.58 |
| CDX74428 | Canola | nucleus | 50.16 | 48.58 |
| CDY00104 | Canola | nucleus | 48.53 | 47.76 |
| PGSC0003DMT400080288 | Potato | nucleus | 44.63 | 47.74 |
| AT3G28920.1 | Thale cress | nucleus | 48.21 | 47.44 |
| KRH01172 | Soybean | nucleus | 51.47 | 46.75 |
| VIT_14s0108g00750.t01 | Wine grape | nucleus | 53.09 | 45.92 |
| AT5G39760.1 | Thale cress | nucleus | 49.84 | 45.81 |
| CDX85230 | Canola | nucleus | 50.16 | 45.43 |
| Bra025363.1-P | Field mustard | nucleus | 49.84 | 44.48 |
| CDX86403 | Canola | nucleus | 49.84 | 44.48 |
| PGSC0003DMT400084919 | Potato | nucleus | 25.08 | 44.0 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 20.85 | 43.54 |
| KRH40099 | Soybean | nucleus, plastid | 43.32 | 43.18 |
| PGSC0003DMT400083993 | Potato | nucleus | 23.78 | 40.78 |
| PGSC0003DMT400050286 | Potato | mitochondrion | 10.42 | 38.55 |
| PGSC0003DMT400033624 | Potato | nucleus | 29.32 | 37.5 |
| PGSC0003DMT400060623 | Potato | nucleus | 28.01 | 35.39 |
| PGSC0003DMT400053397 | Potato | nucleus | 27.69 | 29.62 |
| PGSC0003DMT400090846 | Potato | cytosol | 11.4 | 28.93 |
| PGSC0003DMT400009581 | Potato | nucleus | 26.06 | 28.17 |
| PGSC0003DMT400086860 | Potato | cytosol | 10.75 | 27.73 |
| PGSC0003DMT400009033 | Potato | nucleus | 26.71 | 27.15 |
| PGSC0003DMT400044269 | Potato | nucleus | 19.87 | 14.56 |
| PGSC0003DMT400044270 | Potato | cytosol | 22.48 | 8.52 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102586742 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | UniProt:M1B2L0 | PFAM:PD125774 |
| PFAM:PF04770 | EnsemblPlantsGene:PGSC0003DMG400013708 | PGSC:PGSC0003DMG400013708 | EnsemblPlants:PGSC0003DMT400035635 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF47 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0002961F51 | RefSeq:XP_006357697.1 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : | : |
Description
Zinc finger-homeodomain protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013708]
Coordinates
chr00:+:8020256..8021517
Molecular Weight (calculated)
34004.9 Da
IEP (calculated)
9.237
GRAVY (calculated)
-0.815
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSNNNSTI YTKTPEAETA RIIQHNKPFS ITNGILKRQN HHPLPLPVVV VYKECLKNHA ATMGAHAVDG CGEFMPSPTA TATNPTSLKC AACGCHRNFH
101: RREPEELFPP PNTAAALQYQ SHHRHHPPPP LPNRGSGDHS CPNSPSPPPI SSAYYPSAPH MLLALSSGLS GRPVENNNNH LPINPNSTTP VSNPNGRKRY
201: RTKFTQNQKE KMLEFSERVG WRMQKQDEEI INKLCHEISV EKGVLKVWMH NNKNNFGRKD QSVSNNYING INFGISSTND NNKEETHSHG VSHNNIVSVV
301: ATNGSSS
101: RREPEELFPP PNTAAALQYQ SHHRHHPPPP LPNRGSGDHS CPNSPSPPPI SSAYYPSAPH MLLALSSGLS GRPVENNNNH LPINPNSTTP VSNPNGRKRY
201: RTKFTQNQKE KMLEFSERVG WRMQKQDEEI INKLCHEISV EKGVLKVWMH NNKNNFGRKD QSVSNNYING INFGISSTND NNKEETHSHG VSHNNIVSVV
301: ATNGSSS
001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
Arabidopsis Description
ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.