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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG89637
KRH01172
KRH01880
KRH18475
KRH26296
KRH26348
KRH26349
KRH40099
KRH44088
KRH50585
KRH51275
KRH69650
KRH70724
KRH74513
KRH74865

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G28920.1 KRH01880 AT1G14440.1 16428600
AT3G28920.1 KRH51275 AT1G14440.1 16428600
AT3G28920.1 KRG89637 AT5G15210.1 16428600
AT3G28920.1 KRH50585 AT5G15210.1 16428600
AT3G28920.1 KRH70724 AT5G15210.1 16428600
AT3G28920.1 KRH74865 AT5G15210.1 16428600
AT3G28920.1 KRH01172 AT5G39760.1 16428600
AT3G28920.1 KRH18475 AT5G39760.1 16428600
AT3G28920.1 KRH40099 AT5G39760.1 16428600
AT3G28920.1 KRH69650 AT5G65410.1 16428600
AT3G28920.1 KRH74513 AT5G65410.1 16428600
AT5G39760.1 KRH01880 AT1G14440.1 16428600
AT5G39760.1 KRH51275 AT1G14440.1 16428600
AT5G39760.1 KRH01172 AT3G28920.1 16428600
AT5G39760.1 KRH18475 AT3G28920.1 16428600
AT5G39760.1 KRH40099 AT3G28920.1 16428600
AT5G39760.1 KRG89637 AT5G15210.1 16428600
AT5G39760.1 KRH50585 AT5G15210.1 16428600
AT5G39760.1 KRH70724 AT5G15210.1 16428600
AT5G39760.1 KRH74865 AT5G15210.1 16428600
AT5G39760.1 KRG89637 AT5G15210.1 21245844
AT5G39760.1 KRH50585 AT5G15210.1 21245844
AT5G39760.1 KRH70724 AT5G15210.1 21245844
AT5G39760.1 KRH74865 AT5G15210.1 21245844
AT5G39760.1 KRG89637 AT5G15210.1 21798944
AT5G39760.1 KRH50585 AT5G15210.1 21798944
AT5G39760.1 KRH70724 AT5G15210.1 21798944
AT5G39760.1 KRH74865 AT5G15210.1 21798944
AT5G39760.1 KRH01172 AT5G39760.1 16428600
AT5G39760.1 KRH18475 AT5G39760.1 16428600
AT5G39760.1 KRH40099 AT5G39760.1 16428600
AT5G39760.1 KRH01172 AT5G39760.1 21245844
AT5G39760.1 KRH18475 AT5G39760.1 21245844
AT5G39760.1 KRH40099 AT5G39760.1 21245844
AT5G39760.1 KRH26296 AT5G42780.1 16428600
AT5G39760.1 KRH26348 AT5G42780.1 16428600
AT5G39760.1 KRH26349 AT5G42780.1 16428600
AT5G39760.1 KRH44088 AT5G42780.1 16428600
AT5G39760.1 KRH26296 AT5G42780.1 21798944
AT5G39760.1 KRH26348 AT5G42780.1 21798944
AT5G39760.1 KRH26349 AT5G42780.1 21798944
AT5G39760.1 KRH44088 AT5G42780.1 21798944
AT5G39760.1 KRH69650 AT5G65410.1 16428600
AT5G39760.1 KRH74513 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH40099 Soybean nucleus, plastid 72.19 79.22
KRH18475 Soybean nucleus 56.51 57.7
Solyc02g067310.2.1 Tomato nucleus 49.41 57.19
AT3G28920.1 Thale cress nucleus 51.78 56.09
Bra039038.1-P Field mustard nucleus 50.59 55.34
PGSC0003DMT400017840 Potato nucleus 53.85 55.32
Solyc02g067320.1.1 Tomato nucleus 53.85 54.98
CDY56033 Canola nucleus 44.97 54.87
CDY00104 Canola nucleus 50.59 54.81
CDY20008 Canola nucleus 45.27 54.45
Bra025644.1-P Field mustard nucleus 50.3 53.63
CDX74428 Canola nucleus 50.3 53.63
VIT_14s0108g00750.t01 Wine grape nucleus 55.03 52.39
PGSC0003DMT400034368 Potato nucleus 53.25 52.02
AT5G39760.1 Thale cress nucleus 50.89 51.5
PGSC0003DMT400035635 Potato nucleus 46.75 51.47
CDX85230 Canola nucleus 51.18 51.03
CDX86403 Canola nucleus 50.59 49.71
Bra025363.1-P Field mustard nucleus 50.3 49.42
KRH60587 Soybean nucleus 22.19 49.34
KRH41884 Soybean nucleus 21.3 47.37
KRH03476 Soybean cytosol 10.36 44.3
KRH56913 Soybean cytosol 10.36 44.3
KRH18477 Soybean cytosol, mitochondrion 10.65 43.9
KRG92484 Soybean nucleus 24.56 43.68
KRH63346 Soybean cytosol, mitochondrion 11.24 42.7
KRH54551 Soybean cytosol, mitochondrion 11.24 42.7
KRH74865 Soybean nucleus 37.28 42.57
KRH70724 Soybean nucleus 35.8 41.58
KRH01145 Soybean cytosol 9.17 41.33
KRH45571 Soybean cytosol, nucleus 23.67 41.03
KRG89637 Soybean nucleus 21.6 40.11
KRH45573 Soybean nucleus 23.08 39.39
KRH45572 Soybean nucleus 23.08 39.39
KRH40102 Soybean cytosol, mitochondrion 8.28 38.36
KRH50585 Soybean nucleus 40.53 38.27
KRG93529 Soybean cytosol, mitochondrion 10.95 38.14
KRG99446 Soybean nucleus 28.11 38.0
KRH44088 Soybean nucleus 16.27 37.67
KRH48720 Soybean nucleus 23.37 36.24
KRH16820 Soybean nucleus 27.22 35.38
KRH74513 Soybean nucleus 26.33 35.04
KRH26349 Soybean nucleus 16.57 34.57
KRH72430 Soybean nucleus 27.51 34.44
KRH38989 Soybean nucleus, plastid 23.08 34.06
KRH51275 Soybean nucleus 28.11 33.57
KRG90215 Soybean cytosol 21.01 33.49
KRH40100 Soybean mitochondrion 9.47 33.33
KRH01880 Soybean nucleus 28.11 33.22
KRG90132 Soybean cytosol 19.82 32.68
KRH45574 Soybean cytosol 24.56 31.8
KRH69650 Soybean nucleus 26.63 30.51
KRH26348 Soybean nucleus 16.86 30.0
KRH71954 Soybean nucleus 21.89 29.96
KRH40101 Soybean mitochondrion 8.58 29.9
KRH52923 Soybean nucleus 26.33 29.87
KRH62204 Soybean nucleus 25.74 29.69
KRG90210 Soybean nucleus 22.19 29.3
KRH71953 Soybean nucleus 21.89 28.91
KRG90211 Soybean cytosol 21.89 28.79
KRH26296 Soybean nucleus 16.86 28.79
KRH01146 Soybean cytosol 8.28 28.57
KRH76785 Soybean nucleus 26.33 28.08
KRG90213 Soybean nucleus 21.01 27.84
KRH28682 Soybean nucleus 26.04 26.19
KRH08258 Soybean nucleus 25.15 25.84
KRH69909 Soybean nucleus 25.15 25.45
KRH01171 Soybean mitochondrion 6.51 25.0
Protein Annotations
Gene3D:1.10.10.60EntrezGene:100786999MapMan:15.5.3.13EMBL:ACUP02011503EnsemblPlantsGene:GLYMA_18G259300GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDUniProt:I1N4D2
InterPro:IPR006456EnsemblPlants:KRH01172ProteinID:KRH01172ProteinID:KRH01172.1PFAM:PD125774PFAM:PF04770
PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF47SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566
UniParc:UPI000233E9D3InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg:::
Description
hypothetical protein
Coordinates
chr18:-:54495270..54497027
Molecular Weight (calculated)
36499.4 Da
IEP (calculated)
7.583
GRAVY (calculated)
-0.706
Length
338 amino acids
Sequence
(BLAST)
001: MDITPTTTII NTTTTPSAAK SPEHETETPT RITTPITPTT TKTLSFSNGV LKRHHHHHLH HPMPAVVTYK ECLKNHAANL GGLALDGCGE FMPSPTATAA
101: DPSSIKCAAC GCHRNFHRRE PEDPPITSNT THVIEYQPHH RHHPPPPLHA AAAARSPNSA SPPPISSSYY PSAPHMLLAL SAGLAAPPES TAAPSAALSR
201: KRFRTKFSQE QKEKMHKFAE KVGWKIQKRD EDLIHEFCNE VGVDRSVLKV WMHNNKNTFA KKDNNIVISN DINITTSNNI NTSIIDDNDA NGGDVKVFEN
301: PNNNHGSGSG GGEDPAEDPS RNHYGGVNVG ANGSSSSS
Best Arabidopsis Sequence Match ( AT5G15210.1 )
(BLAST)
001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
Arabidopsis Description
ZHD8Zinc-finger homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.