Factsheet for Solyc02g067320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102980.2.1
Solyc02g067310.2.1
Solyc02g067320.1.1
Solyc03g098060.1.1
Solyc04g014260.1.1
Solyc04g080490.2.1
Solyc05g007580.1.1
Solyc05g051420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28920.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT3G28920.1	Solyc04g080490.2.1	AT1G75240.1	16428600
AT3G28920.1	Solyc04g080490.2.1	AT2G18350.1	16428600
AT3G28920.1	Solyc04g080490.2.1	AT3G50890.1	16428600
AT3G28920.1	Solyc05g007580.1.1	AT5G15210.1	16428600
AT3G28920.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT3G28920.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT3G28920.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT3G28920.1	Solyc05g051420.1.1	AT5G65410.1	16428600
AT5G39760.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT5G39760.1	Solyc04g080490.2.1	AT1G75240.1	16428600
AT5G39760.1	Solyc04g080490.2.1	AT2G18350.1	16428600
AT5G39760.1	Solyc02g067310.2.1	AT3G28920.1	16428600
AT5G39760.1	Solyc02g067320.1.1	AT3G28920.1	16428600
AT5G39760.1	Solyc04g080490.2.1	AT3G50890.1	16428600
AT5G39760.1	Solyc05g007580.1.1	AT5G15210.1	16428600
AT5G39760.1	Solyc05g007580.1.1	AT5G15210.1	21245844
AT5G39760.1	Solyc05g007580.1.1	AT5G15210.1	21798944
AT5G39760.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT5G39760.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT5G39760.1	Solyc02g067310.2.1	AT5G39760.1	21245844
AT5G39760.1	Solyc02g067320.1.1	AT5G39760.1	21245844
AT5G39760.1	Solyc03g098060.1.1	AT5G42780.1	16428600
AT5G39760.1	Solyc03g098060.1.1	AT5G42780.1	21798944
AT5G39760.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT5G39760.1	Solyc05g051420.1.1	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017840	Potato	nucleus	90.94	91.49
Solyc02g067310.2.1	Tomato	nucleus	66.16	75.0
KRH01172	Soybean	nucleus	54.98	53.85
CDY56033	Canola	nucleus	43.81	52.35
KRH18475	Soybean	nucleus	52.27	52.27
Bra039038.1-P	Field mustard	nucleus	48.04	51.46
AT3G28920.1	Thale cress	nucleus	48.34	51.28
CDY20008	Canola	nucleus	43.5	51.25
Bra025644.1-P	Field mustard	nucleus	48.64	50.79
CDX74428	Canola	nucleus	48.64	50.79
CDY00104	Canola	nucleus	47.73	50.64
VIT_14s0108g00750.t01	Wine grape	nucleus	52.87	49.3
AT5G39760.1	Thale cress	nucleus	49.24	48.8
Solyc05g007580.1.1	Tomato	nucleus	43.5	48.48
CDX85230	Canola	nucleus	49.24	48.08
KRH40099	Soybean	nucleus, plastid	44.41	47.73
CDX86403	Canola	nucleus	49.24	47.38
Solyc05g051420.1.1	Tomato	nucleus	23.87	47.31
Bra025363.1-P	Field mustard	nucleus	48.94	47.09
Solyc04g074990.2.1	Tomato	nucleus	20.24	46.85
Solyc03g116070.1.1	Tomato	mitochondrion	10.57	42.17
Solyc03g061620.1.1	Tomato	cytosol	11.18	42.05
Solyc03g098060.1.1	Tomato	nucleus	22.66	41.9
Solyc02g067330.1.1	Tomato	cytosol, nucleus, plastid	12.08	39.22
Solyc02g087970.1.1	Tomato	mitochondrion	10.57	38.89
Solyc01g103820.1.1	Tomato	cytosol	10.27	36.17
Solyc04g014260.1.1	Tomato	nucleus	26.89	36.03
Solyc05g018740.1.1	Tomato	cytosol	12.08	33.61
Solyc01g102980.2.1	Tomato	nucleus	27.19	31.03
Solyc05g020000.1.1	Tomato	cytosol	10.88	30.25
Solyc01g103810.1.1	Tomato	cytosol	10.57	30.17
Solyc02g085160.1.1	Tomato	nucleus	25.38	28.67
Solyc04g080490.2.1	Tomato	nucleus	24.77	28.28
Solyc09g089550.2.1	Tomato	nucleus	20.85	8.57

Protein Annotations

EnsemblPlants:Solyc02g067320.1.1	EnsemblPlantsGene:Solyc02g067320.1	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PANTHER:PTHR31948:SF29	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00027691CA	UniProt:K4B764	MapMan:15.5.3.13	:

Description

No Description!

Coordinates

chr2:-:37520623..37521618

Molecular Weight (calculated)

36518.5 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.858

Length

331 amino acids

Sequence
(BLAST)

001: MELNINTNTT AAITTVKTPE LAETETPSRI QQPKPFSFSN GVLKRKNHHH PVVVVYKECL KNHAANLGTH AVDGCGEFLP IPAANPADPT SLKCAACGCH
101: RNFHRREPEE PPPIATAAIE YQPHHRHHPP PPRGDHGSPN SPSPPPISSA YYPASAPHML LALSAGFSGE KNQNLPTSTT PMAVANSNGR KRFRTKFTPD
201: QKIKMLEFAE KVEWKMQKRD EDLVNNFCNE IGVEKGVLKV WMHNNKTTSI SGKKLDQPNT DNGHNHQNGN SNYTVNGFCI VDRNNTTHHH DNTDSEFHIH
301: HESSMNDDNK KENSSFGANN VVVTNGSSSS S

Best Arabidopsis Sequence Match ( AT3G28920.1 )
(BLAST)

001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS

Arabidopsis Description

ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.