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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69541
CDX73152
CDX73775
CDX74428
CDX77960
CDX81284
CDX81638
CDX85059
CDX90679
CDX95914
CDY01760
CDY14559
CDY28566
CDY28987
CDY33960
CDY37252
CDY37827
CDY39311
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531
CDY70108
CDY70550
CDY71124

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G28920.1 CDX81638 AT1G14440.1 16428600
AT3G28920.1 CDY39311 AT1G14440.1 16428600
AT3G28920.1 CDY45257 AT1G14440.1 16428600
AT3G28920.1 CDY53549 AT1G14440.1 16428600
AT3G28920.1 CDX95914 AT1G69600.1 16428600
AT3G28920.1 CDY01760 AT1G69600.1 16428600
AT3G28920.1 CDY28566 AT1G69600.1 16428600
AT3G28920.1 CDY44079 AT1G69600.1 16428600
AT3G28920.1 CDX73152 AT1G75240.1 16428600
AT3G28920.1 CDY37252 AT1G75240.1 16428600
AT3G28920.1 CDY45419 AT1G75240.1 16428600
AT3G28920.1 CDY62531 AT1G75240.1 16428600
AT3G28920.1 CDY70108 AT2G18350.1 16428600
AT3G28920.1 CDY70550 AT2G18350.1 16428600
AT3G28920.1 CDY71124 AT2G18350.1 16428600
AT3G28920.1 CDX73775 AT3G50890.1 16428600
AT3G28920.1 CDX77960 AT3G50890.1 16428600
AT3G28920.1 CDX90679 AT3G50890.1 16428600
AT3G28920.1 CDY28987 AT3G50890.1 16428600
AT3G28920.1 CDX69541 AT5G15210.1 16428600
AT3G28920.1 CDX85059 AT5G15210.1 16428600
AT3G28920.1 CDX74428 AT5G39760.1 16428600
AT3G28920.1 CDY56033 AT5G39760.1 16428600
AT3G28920.1 CDX81284 AT5G65410.1 16428600
AT3G28920.1 CDY14559 AT5G65410.1 16428600
AT3G28920.1 CDY33960 AT5G65410.1 16428600
AT3G28920.1 CDY37827 AT5G65410.1 16428600
AT3G28920.1 CDY54719 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY20008 Canola nucleus 88.46 98.22
Bra039038.1-P Field mustard nucleus 96.47 97.41
CDX85230 Canola nucleus 86.22 79.35
CDX86403 Canola nucleus 85.9 77.91
AT3G28920.1 Thale cress nucleus 75.0 75.0
CDY56033 Canola nucleus 57.69 64.98
CDX74428 Canola nucleus 64.42 63.41
CDX69541 Canola nucleus 44.23 52.47
Solyc02g067310.2.1 Tomato nucleus 49.04 52.4
KRH01172 Soybean nucleus 54.81 50.59
KRH18475 Soybean nucleus 53.53 50.45
CDX88760 Canola nucleus 29.17 50.28
CDX85059 Canola nucleus 37.82 49.58
CDY69628 Canola nucleus 27.88 48.6
PGSC0003DMT400035635 Potato nucleus 47.76 48.53
Solyc02g067320.1.1 Tomato nucleus 50.64 47.73
CDX81897 Canola mitochondrion 13.46 47.73
PGSC0003DMT400017840 Potato nucleus 50.32 47.72
PGSC0003DMT400034368 Potato nucleus 52.88 47.69
VIT_14s0108g00750.t01 Wine grape nucleus 53.21 46.76
CDX95914 Canola nucleus 34.62 46.75
CDX83807 Canola mitochondrion 13.14 46.59
CDY26722 Canola mitochondrion 13.14 46.59
CDY21695 Canola mitochondrion 13.14 46.59
CDY19248 Canola mitochondrion 13.14 46.59
KRH40099 Soybean nucleus, plastid 43.91 44.48
CDX96695 Canola mitochondrion 12.5 44.32
CDY01760 Canola nucleus 35.9 43.75
CDY44079 Canola nucleus 34.62 42.35
CDY28566 Canola nucleus 34.29 41.96
CDX86404 Canola mitochondrion 11.54 39.56
CDX73105 Canola mitochondrion 11.86 39.36
CDX96558 Canola mitochondrion 11.86 39.36
CDX68172 Canola mitochondrion 12.18 39.18
CDX85849 Canola mitochondrion 12.18 39.18
CDY08945 Canola nucleus 26.28 39.05
CDX88950 Canola nucleus 25.96 38.57
CDX85228 Canola mitochondrion, nucleus 11.22 38.46
CDX77960 Canola nucleus 26.6 37.9
CDY34299 Canola nucleus 27.24 37.78
CDY20009 Canola mitochondrion 11.86 37.76
CDY00105 Canola mitochondrion 11.86 37.76
CDY24844 Canola nucleus 25.32 37.62
CDY03431 Canola nucleus 26.6 37.22
CDX73775 Canola nucleus 25.64 37.21
CDY54719 Canola nucleus 28.21 36.51
CDY33960 Canola nucleus 30.13 34.94
CDY37827 Canola nucleus 30.45 34.93
CDX81284 Canola nucleus 28.53 34.9
CDX90679 Canola nucleus 26.6 34.16
CDY28987 Canola nucleus 26.6 33.88
CDY14559 Canola nucleus 29.81 31.74
CDY37252 Canola nucleus 26.28 31.42
CDY62531 Canola nucleus 25.96 30.8
CDY45419 Canola nucleus 27.88 30.21
CDX85886 Canola nucleus 28.21 29.93
CDX73152 Canola nucleus 28.53 29.77
CDX68137 Canola nucleus 27.56 28.96
CDY09363 Canola nucleus 27.56 28.86
CDY41692 Canola nucleus 27.56 28.67
CDY53549 Canola nucleus 27.88 27.71
CDY70550 Canola nucleus 22.76 27.63
CDX81638 Canola nucleus 27.88 27.62
CDY45257 Canola nucleus 26.92 27.01
CDY70108 Canola nucleus 22.76 26.79
CDY71124 Canola nucleus 21.79 26.46
CDY39311 Canola nucleus 25.64 26.14
CDY46298 Canola cytosol 6.73 25.0
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13GO:A0A078EH54EnsemblPlants:CDY00104ProteinID:CDY00104ProteinID:CDY00104.1
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00109603001InterPro:Homeobox-like_sf
InterPro:Homeodomain_ZF_HDInterPro:IPR006456PFAM:PD125774PFAM:PF04770PFscan:PS51523PANTHER:PTHR31948
PANTHER:PTHR31948:SF47SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0004EDB0DAInterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg:::::
Description
BnaC09g01970D
Coordinates
chrLK031916:+:813438..814574
Molecular Weight (calculated)
33893.3 Da
IEP (calculated)
8.340
GRAVY (calculated)
-0.911
Length
312 amino acids
Sequence
(BLAST)
001: MDMTLKSPEP EPENPTRIQP AKPISFGNGI TKRHHHHHHP IAVTYKECLK NHAAAIGGHA LDGCGEFMPS PSSTPSDPTS LKCAACGCHR NFHRRDPEDS
101: SLTSAVPPPS LPPSSTLEYQ PHHRHHPPPP APHLRRSPTS SSPPPISSSY MLLALSGTNK PGGNSLPFSD LNFAANNLST HHLTPGSRKR FRTKFSQAQK
201: EKMHEFADRI GWKFQKRDED DVRDFCREVG VDKGVLKVWM HNNKNTFNNR RDQPVAGGTT VHCVDNDVAV NNAKDDGVHG GNGLEHNLHG DGADGGNANG
301: SSSSSGKSNN EA
Best Arabidopsis Sequence Match ( AT3G28920.1 )
(BLAST)
001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
Arabidopsis Description
ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.