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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG89637
KRH01172
KRH01880
KRH18475
KRH26296
KRH26348
KRH26349
KRH40099
KRH44088
KRH50585
KRH51275
KRH69650
KRH70724
KRH74513
KRH74865

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G28920.1 KRH01880 AT1G14440.1 16428600
AT3G28920.1 KRH51275 AT1G14440.1 16428600
AT3G28920.1 KRG89637 AT5G15210.1 16428600
AT3G28920.1 KRH50585 AT5G15210.1 16428600
AT3G28920.1 KRH70724 AT5G15210.1 16428600
AT3G28920.1 KRH74865 AT5G15210.1 16428600
AT3G28920.1 KRH01172 AT5G39760.1 16428600
AT3G28920.1 KRH18475 AT5G39760.1 16428600
AT3G28920.1 KRH40099 AT5G39760.1 16428600
AT3G28920.1 KRH69650 AT5G65410.1 16428600
AT3G28920.1 KRH74513 AT5G65410.1 16428600
AT5G39760.1 KRH01880 AT1G14440.1 16428600
AT5G39760.1 KRH51275 AT1G14440.1 16428600
AT5G39760.1 KRH01172 AT3G28920.1 16428600
AT5G39760.1 KRH18475 AT3G28920.1 16428600
AT5G39760.1 KRH40099 AT3G28920.1 16428600
AT5G39760.1 KRG89637 AT5G15210.1 16428600
AT5G39760.1 KRH50585 AT5G15210.1 16428600
AT5G39760.1 KRH70724 AT5G15210.1 16428600
AT5G39760.1 KRH74865 AT5G15210.1 16428600
AT5G39760.1 KRG89637 AT5G15210.1 21245844
AT5G39760.1 KRH50585 AT5G15210.1 21245844
AT5G39760.1 KRH70724 AT5G15210.1 21245844
AT5G39760.1 KRH74865 AT5G15210.1 21245844
AT5G39760.1 KRG89637 AT5G15210.1 21798944
AT5G39760.1 KRH50585 AT5G15210.1 21798944
AT5G39760.1 KRH70724 AT5G15210.1 21798944
AT5G39760.1 KRH74865 AT5G15210.1 21798944
AT5G39760.1 KRH01172 AT5G39760.1 16428600
AT5G39760.1 KRH18475 AT5G39760.1 16428600
AT5G39760.1 KRH40099 AT5G39760.1 16428600
AT5G39760.1 KRH01172 AT5G39760.1 21245844
AT5G39760.1 KRH18475 AT5G39760.1 21245844
AT5G39760.1 KRH40099 AT5G39760.1 21245844
AT5G39760.1 KRH26296 AT5G42780.1 16428600
AT5G39760.1 KRH26348 AT5G42780.1 16428600
AT5G39760.1 KRH26349 AT5G42780.1 16428600
AT5G39760.1 KRH44088 AT5G42780.1 16428600
AT5G39760.1 KRH26296 AT5G42780.1 21798944
AT5G39760.1 KRH26348 AT5G42780.1 21798944
AT5G39760.1 KRH26349 AT5G42780.1 21798944
AT5G39760.1 KRH44088 AT5G42780.1 21798944
AT5G39760.1 KRH69650 AT5G65410.1 16428600
AT5G39760.1 KRH74513 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH01172 Soybean nucleus 57.7 56.51
Solyc02g067310.2.1 Tomato nucleus 49.55 56.16
AT3G28920.1 Thale cress nucleus 52.57 55.77
Bra039038.1-P Field mustard nucleus 50.76 54.37
CDY20008 Canola nucleus 45.62 53.74
CDY00104 Canola nucleus 50.45 53.53
PGSC0003DMT400035635 Potato nucleus 49.24 53.09
CDY56033 Canola nucleus 44.41 53.07
Solyc02g067320.1.1 Tomato nucleus 52.27 52.27
Bra025644.1-P Field mustard nucleus 49.85 52.05
CDX74428 Canola nucleus 49.85 52.05
PGSC0003DMT400017840 Potato nucleus 51.36 51.67
KRH40099 Soybean nucleus, plastid 47.13 50.65
AT5G39760.1 Thale cress nucleus 51.06 50.6
CDX85230 Canola nucleus 51.66 50.44
PGSC0003DMT400034368 Potato nucleus 52.27 50.0
Bra025363.1-P Field mustard nucleus 51.66 49.71
CDX86403 Canola nucleus 51.66 49.71
KRH60587 Soybean nucleus 22.05 48.03
VIT_14s0108g00750.t01 Wine grape nucleus 50.76 47.32
KRH41884 Soybean nucleus 21.15 46.05
KRG92484 Soybean nucleus 24.77 43.16
KRH45571 Soybean cytosol, nucleus 25.38 43.08
KRH56913 Soybean cytosol 10.27 43.04
KRH03476 Soybean cytosol 10.27 43.04
KRH74865 Soybean nucleus 37.76 42.23
KRH18477 Soybean cytosol, mitochondrion 10.27 41.46
KRH70724 Soybean nucleus 36.25 41.24
KRH45572 Soybean nucleus 24.47 40.91
KRH45573 Soybean nucleus 24.47 40.91
KRH01145 Soybean cytosol 9.06 40.0
KRH63346 Soybean cytosol, mitochondrion 10.57 39.33
KRH54551 Soybean cytosol, mitochondrion 10.57 39.33
KRH50585 Soybean nucleus 41.09 37.99
KRG89637 Soybean nucleus 20.85 37.91
KRH40100 Soybean mitochondrion 10.88 37.5
KRG93529 Soybean cytosol, mitochondrion 10.88 37.11
KRH40102 Soybean cytosol, mitochondrion 8.16 36.99
KRG99446 Soybean nucleus 27.79 36.8
KRH74513 Soybean nucleus 27.49 35.83
KRH16820 Soybean nucleus 27.49 35.0
KRH72430 Soybean nucleus 28.4 34.81
KRH48720 Soybean nucleus 22.66 34.4
KRH45574 Soybean cytosol 26.59 33.72
KRH44088 Soybean nucleus 14.8 33.56
KRG90215 Soybean cytosol 21.45 33.49
KRG90132 Soybean cytosol 20.24 32.68
KRH51275 Soybean nucleus 27.79 32.51
KRH38989 Soybean nucleus, plastid 22.36 32.31
KRH01880 Soybean nucleus 27.79 32.17
KRH69650 Soybean nucleus 27.49 30.85
KRH62204 Soybean nucleus 26.59 30.03
KRH52923 Soybean nucleus 26.89 29.87
KRG90210 Soybean nucleus 22.96 29.69
KRH26349 Soybean nucleus 14.5 29.63
KRH71954 Soybean nucleus 22.05 29.55
KRH71953 Soybean nucleus 22.36 28.91
KRH40101 Soybean mitochondrion 8.46 28.87
KRG90213 Soybean nucleus 22.05 28.63
KRH01146 Soybean cytosol 8.46 28.57
KRG90211 Soybean cytosol 22.05 28.4
KRH76785 Soybean nucleus 26.28 27.44
KRH28682 Soybean nucleus 26.28 25.89
KRH26348 Soybean nucleus 14.8 25.79
KRH26296 Soybean nucleus 15.11 25.25
KRH08258 Soybean nucleus 24.77 24.92
KRH69909 Soybean nucleus 24.77 24.55
KRH01171 Soybean mitochondrion 6.04 22.73
Protein Annotations
Gene3D:1.10.10.60EntrezGene:100814730MapMan:15.5.3.13EMBL:ACUP02008076EnsemblPlantsGene:GLYMA_13G062900GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDUniProt:I1LWK4
InterPro:IPR006456EnsemblPlants:KRH18475ProteinID:KRH18475ProteinID:KRH18475.1PFAM:PD125774PFAM:PF04770
PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF47SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566
UniParc:UPI0002261DFEInterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg:::
Description
hypothetical protein
Coordinates
chr13:+:16095086..16096824
Molecular Weight (calculated)
35585.4 Da
IEP (calculated)
8.015
GRAVY (calculated)
-0.758
Length
331 amino acids
Sequence
(BLAST)
001: MEIITPTATA TNATAKSPEP DIETMTRIHQ NPNPNPKPVS FSNGVLKRHH VNHRAAVVYK ECLKNHVASL GGHALDGCGE FMPSPAATAD DPSSIKCAAC
101: GCHRNFHRRE PEESPISPAT HHVLEYRPHH RHHPPPPHRS PNSASPPPIS SYPSAPHMLL ALSGGAGLSV APENTAAPAP PHHSRKRFRT KFTQEQKEKM
201: HEFADKVGWK MQRRDEEMVM EFCNEIGVDR GVLKVWMHNN KNTFAKKDNL NGNSIGNVAI VSANGVAPIG AVGSATVRSS VHVHEHEHGG INGNGSGDNN
301: HNPLGSRDVN EYENDSGTNG GGGTNGSSSS S
Best Arabidopsis Sequence Match ( AT3G28920.1 )
(BLAST)
001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
Arabidopsis Description
ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.