Factsheet for Solyc02g067310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	peroxisome
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102980.2.1
Solyc02g067310.2.1
Solyc02g067320.1.1
Solyc03g098060.1.1
Solyc04g014260.1.1
Solyc04g080490.2.1
Solyc05g007580.1.1
Solyc05g051420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28920.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT3G28920.1	Solyc04g080490.2.1	AT1G75240.1	16428600
AT3G28920.1	Solyc04g080490.2.1	AT2G18350.1	16428600
AT3G28920.1	Solyc04g080490.2.1	AT3G50890.1	16428600
AT3G28920.1	Solyc05g007580.1.1	AT5G15210.1	16428600
AT3G28920.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT3G28920.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT3G28920.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT3G28920.1	Solyc05g051420.1.1	AT5G65410.1	16428600
AT5G39760.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT5G39760.1	Solyc04g080490.2.1	AT1G75240.1	16428600
AT5G39760.1	Solyc04g080490.2.1	AT2G18350.1	16428600
AT5G39760.1	Solyc02g067310.2.1	AT3G28920.1	16428600
AT5G39760.1	Solyc02g067320.1.1	AT3G28920.1	16428600
AT5G39760.1	Solyc04g080490.2.1	AT3G50890.1	16428600
AT5G39760.1	Solyc05g007580.1.1	AT5G15210.1	16428600
AT5G39760.1	Solyc05g007580.1.1	AT5G15210.1	21245844
AT5G39760.1	Solyc05g007580.1.1	AT5G15210.1	21798944
AT5G39760.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT5G39760.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT5G39760.1	Solyc02g067310.2.1	AT5G39760.1	21245844
AT5G39760.1	Solyc02g067320.1.1	AT5G39760.1	21245844
AT5G39760.1	Solyc03g098060.1.1	AT5G42780.1	16428600
AT5G39760.1	Solyc03g098060.1.1	AT5G42780.1	21798944
AT5G39760.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT5G39760.1	Solyc05g051420.1.1	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034368	Potato	nucleus	91.1	76.88
Solyc02g067320.1.1	Tomato	nucleus	75.0	66.16
Solyc04g074990.2.1	Tomato	nucleus	24.66	50.35
Bra039038.1-P	Field mustard	nucleus	52.74	49.84
KRH18475	Soybean	nucleus	56.16	49.55
CDY20008	Canola	nucleus	47.6	49.47
KRH01172	Soybean	nucleus	57.19	49.41
VIT_14s0108g00750.t01	Wine grape	nucleus	59.93	49.3
AT3G28920.1	Thale cress	nucleus	52.4	49.04
CDY00104	Canola	nucleus	52.4	49.04
CDY56033	Canola	nucleus	45.89	48.38
Bra025644.1-P	Field mustard	nucleus	51.37	47.32
CDX74428	Canola	nucleus	51.37	47.32
Solyc05g051420.1.1	Tomato	nucleus	27.05	47.31
AT5G39760.1	Thale cress	nucleus	53.42	46.71
Solyc03g061620.1.1	Tomato	cytosol	14.04	46.59
Solyc05g007580.1.1	Tomato	nucleus	46.92	46.13
CDX85230	Canola	nucleus	53.42	46.02
CDX86403	Canola	nucleus	53.08	45.06
Bra025363.1-P	Field mustard	nucleus	52.74	44.77
KRH40099	Soybean	nucleus, plastid	45.89	43.51
Solyc03g116070.1.1	Tomato	mitochondrion	12.33	43.37
Solyc03g098060.1.1	Tomato	nucleus	26.03	42.46
Solyc02g087970.1.1	Tomato	mitochondrion	13.01	42.22
Solyc02g067330.1.1	Tomato	cytosol, nucleus, plastid	14.38	41.18
Solyc04g014260.1.1	Tomato	nucleus	30.82	36.44
Solyc01g103820.1.1	Tomato	cytosol	11.3	35.11
Solyc05g018740.1.1	Tomato	cytosol	13.7	33.61
Solyc01g102980.2.1	Tomato	nucleus	31.16	31.38
Solyc01g103810.1.1	Tomato	cytosol	12.33	31.03
Solyc05g020000.1.1	Tomato	cytosol	12.33	30.25
Solyc04g080490.2.1	Tomato	nucleus	28.08	28.28
Solyc02g085160.1.1	Tomato	nucleus	28.08	27.99
Solyc09g089550.2.1	Tomato	nucleus	24.32	8.82

Protein Annotations

EnsemblPlants:Solyc02g067310.2.1	EnsemblPlantsGene:Solyc02g067310.2	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PANTHER:PTHR31948:SF29	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00027691C9	UniProt:K4B763	MapMan:15.5.3.13	:

Description

No Description!

Coordinates

chr2:+:37494131..37495541

Molecular Weight (calculated)

32088.4 Da

IEP (calculated)

8.197

GRAVY (calculated)

-0.871

Length

292 amino acids

Sequence
(BLAST)

001: MELTNNNNTT ISTITTTTTV KTPEAEIETP TQIQKLKPFP FSNGVLKRKS SFNHNNHHHP VVVIYRECLK NHAASLGGHA VDGCGEFLPS PAANPSDPTS
101: LKCAACGCHR NFHRREPEEP VVIPPPPIAT AVLEYQPHHR HHPPHPPPPL QGEHSSPNSP SPPPISSAYY PASAPHMLLA LSAGFSGEKN QNPTSAPLGH
201: SNGRKRFRTK FTPDQKVKMQ EFAERVGWKM QKRDEDLVSN FCNEIGVEKG VLKVWMHNNK NTFGKKSDQP NSGSGDGDND NDDNHHQNAT SA

Best Arabidopsis Sequence Match ( AT3G28920.1 )
(BLAST)

001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS

Arabidopsis Description

ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.