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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g102980.2.1
Solyc02g067310.2.1
Solyc02g067320.1.1
Solyc03g098060.1.1
Solyc04g014260.1.1
Solyc04g080240.2.1
Solyc04g080490.2.1
Solyc05g007580.1.1
Solyc05g051420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65410.1 Solyc01g102980.2.1 AT1G14440.1 16428600
AT5G65410.1 Solyc04g080490.2.1 AT1G75240.1 16428600
AT5G65410.1 Solyc04g080490.2.1 AT2G18350.1 16428600
AT5G65410.1 Solyc02g067310.2.1 AT3G28920.1 16428600
AT5G65410.1 Solyc02g067320.1.1 AT3G28920.1 16428600
AT5G65410.1 Solyc04g080490.2.1 AT3G50890.1 16428600
AT5G65410.1 Solyc05g007580.1.1 AT5G15210.1 16428600
AT5G65410.1 Solyc02g067310.2.1 AT5G39760.1 16428600
AT5G65410.1 Solyc02g067320.1.1 AT5G39760.1 16428600
AT5G65410.1 Solyc02g067310.2.1 AT5G39760.1 21798944
AT5G65410.1 Solyc02g067320.1.1 AT5G39760.1 21798944
AT5G65410.1 Solyc03g098060.1.1 AT5G42780.1 16428600
AT5G65410.1 Solyc04g080240.2.1 AT5G42950.1 16120600
AT5G65410.1 Solyc04g014260.1.1 AT5G65410.1 16428600
AT5G65410.1 Solyc05g051420.1.1 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400084919 Potato nucleus 88.62 84.57
PGSC0003DMT400096005 Potato cytosol, mitochondrion, nucleus 71.86 81.63
Solyc04g074990.2.1 Tomato nucleus 40.12 46.85
Solyc04g014260.1.1 Tomato nucleus 67.07 45.34
VIT_00s0199g00250.t01 Wine grape nucleus 62.87 43.03
KRH74513 Soybean nucleus 64.07 42.13
GSMUA_Achr7P19060_001 Banana nucleus 50.3 40.78
GSMUA_Achr3P20390_001 Banana nucleus 48.5 39.13
GSMUA_Achr6P02170_001 Banana nucleus 53.89 38.96
GSMUA_Achr10P... Banana nucleus 52.69 38.43
Solyc03g098060.1.1 Tomato nucleus 40.72 37.99
GSMUA_Achr5P05500_001 Banana nucleus 52.69 36.97
Zm00001d020774_P001 Maize nucleus 59.88 36.63
Solyc03g061620.1.1 Tomato cytosol 19.16 36.36
Os09t0466400-01 Rice nucleus 59.88 35.84
KRH69650 Soybean nucleus 62.87 35.59
Solyc02g067330.1.1 Tomato cytosol, nucleus, plastid 21.56 35.29
Solyc03g116070.1.1 Tomato mitochondrion 17.37 34.94
Zm00001d005931_P001 Maize nucleus 58.68 34.27
EER96888 Sorghum nucleus 61.68 34.11
Os08t0479400-01 Rice nucleus 58.08 33.45
TraesCS5D01G253100.1 Wheat nucleus 58.08 32.77
CDY54719 Canola nucleus 46.71 32.37
TraesCS5B01G243800.1 Wheat nucleus 57.48 32.32
Bra037816.1-P Field mustard nucleus 46.71 32.23
HORVU5Hr1G069730.1 Barley nucleus 58.08 32.12
GSMUA_AchrUn_... Banana nucleus 47.9 32.0
TraesCS5A01G246500.1 Wheat nucleus 56.89 31.99
Zm00001d031840_P001 Maize nucleus 58.68 31.82
Solyc02g087970.1.1 Tomato mitochondrion 16.77 31.11
EES15144 Sorghum nucleus 57.48 30.87
CDX81284 Canola nucleus 46.71 30.59
Solyc01g102980.2.1 Tomato nucleus 52.1 30.0
CDY37827 Canola nucleus 47.31 29.04
Bra031859.1-P Field mustard nucleus 47.31 29.04
CDY33960 Canola nucleus 46.71 29.0
Solyc04g080490.2.1 Tomato nucleus 50.3 28.97
Solyc01g103820.1.1 Tomato cytosol 16.17 28.72
AT5G65410.1 Thale cress nucleus 47.9 28.67
Solyc05g018740.1.1 Tomato cytosol 20.36 28.57
CDY14559 Canola nucleus 49.1 27.99
Bra024382.1-P Field mustard nucleus 49.1 27.99
Solyc05g020000.1.1 Tomato cytosol 19.76 27.73
Solyc02g067310.2.1 Tomato nucleus 47.31 27.05
Solyc01g103810.1.1 Tomato cytosol 18.56 26.72
Solyc02g085160.1.1 Tomato nucleus 45.51 25.94
Solyc05g007580.1.1 Tomato nucleus 44.91 25.25
Solyc02g067320.1.1 Tomato nucleus 47.31 23.87
Solyc09g089550.2.1 Tomato nucleus 30.54 6.34
Protein Annotations
EnsemblPlants:Solyc05g051420.1.1EnsemblPlantsGene:Solyc05g051420.1Gene3D:1.10.10.60GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456InterPro:ZF_HD_homeobox_Cys/His_dimerPANTHER:PTHR31948
PANTHER:PTHR31948:SF5PFAM:PD125774PFAM:PF04770PFscan:PS51523SUPFAM:SSF46689TIGRFAMs:TIGR01565
TIGRFAMs:TIGR01566UniParc:UPI00027656E8UniProt:K4C1H3MapMan:15.5.3.13::
Description
No Description!
Coordinates
chr5:-:61721814..61724132
Molecular Weight (calculated)
19301.5 Da
IEP (calculated)
10.355
GRAVY (calculated)
-0.751
Length
167 amino acids
Sequence
(BLAST)
001: MSKYKECLKN HAAGIGGHAV DGCGEFMPSG DIFKCAVCNC HRNFHRKDTV HHHHPCGYFP HIMPRRRSLV LPSTSRGGGF REDQELLEMC NPNKNIIGTL
101: LKKRFRTKFS QEHKDKMLRL AEKLGWKLQR HDEGVVQQLC NEIGIKRHVF KVWLHNNKHT LGKKTNP
Best Arabidopsis Sequence Match ( AT2G02540.1 )
(BLAST)
001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP
Arabidopsis Description
ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.