Factsheet for Zm00001d031840_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005757_P001
Zm00001d005931_P001
Zm00001d009674_P001
Zm00001d013409_P001
Zm00001d017784_P001
Zm00001d018770_P003
Zm00001d020460_P001
Zm00001d020774_P001
Zm00001d031840_P001
Zm00001d032175_P001
Zm00001d033791_P001
Zm00001d034263_P004
Zm00001d041780_P001
Zm00001d049000_P001
Zm00001d050443_P001
Zm00001d051573_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65410.1	Zm00001d041780_P001	AT1G14440.1	16428600
AT5G65410.1	Zm00001d049000_P001	AT1G14440.1	16428600
AT5G65410.1	Zm00001d009674_P001	AT1G75240.1	16428600
AT5G65410.1	Zm00001d017784_P001	AT1G75240.1	16428600
AT5G65410.1	Zm00001d051573_P001	AT1G75240.1	16428600
AT5G65410.1	Zm00001d009674_P001	AT2G18350.1	16428600
AT5G65410.1	Zm00001d017784_P001	AT2G18350.1	16428600
AT5G65410.1	Zm00001d051573_P001	AT2G18350.1	16428600
AT5G65410.1	Zm00001d009674_P001	AT3G50890.1	16428600
AT5G65410.1	Zm00001d017784_P001	AT3G50890.1	16428600
AT5G65410.1	Zm00001d051573_P001	AT3G50890.1	16428600
AT5G65410.1	Zm00001d005757_P001	AT5G15210.1	16428600
AT5G65410.1	Zm00001d020460_P001	AT5G15210.1	16428600
AT5G65410.1	Zm00001d032175_P001	AT5G15210.1	16428600
AT5G65410.1	Zm00001d050443_P001	AT5G15210.1	16428600
AT5G65410.1	Zm00001d013409_P001	AT5G42780.1	16428600
AT5G65410.1	Zm00001d033791_P001	AT5G42780.1	16428600
AT5G65410.1	Zm00001d018770_P003	AT5G42950.1	16120600
AT5G65410.1	Zm00001d034263_P004	AT5G42950.1	16120600
AT5G65410.1	Zm00001d005931_P001	AT5G65410.1	16428600
AT5G65410.1	Zm00001d020774_P001	AT5G65410.1	16428600
AT5G65410.1	Zm00001d031840_P001	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15144	Sorghum	nucleus	87.66	86.82
Os08t0479400-01	Rice	nucleus	75.0	79.66
Zm00001d020774_P001	Maize	nucleus	66.23	74.73
Zm00001d005931_P001	Maize	nucleus	66.23	71.33
GSMUA_Achr7P19060_001	Banana	nucleus	46.75	69.9
VIT_18s0001g07140.t01	Wine grape	nucleus	51.62	69.13
GSMUA_Achr6P02170_001	Banana	nucleus	47.4	63.2
Solyc04g074990.2.1	Tomato	nucleus	28.25	60.84
Solyc05g051420.1.1	Tomato	nucleus	31.82	58.68
VIT_00s0199g00250.t01	Wine grape	nucleus	46.43	58.61
PGSC0003DMT400084919	Potato	nucleus	33.12	58.29
KRH74513	Soybean	nucleus	47.08	57.09
KRH45571	Soybean	cytosol, nucleus	36.04	56.92
KRH45572	Soybean	nucleus	35.71	55.56
KRH45573	Soybean	nucleus	35.71	55.56
PGSC0003DMT400096005	Potato	cytosol, mitochondrion, nucleus	26.3	55.1
KRG99446	Soybean	nucleus	44.16	54.4
PGSC0003DMT400033624	Potato	nucleus	41.23	52.92
PGSC0003DMT400060623	Potato	nucleus	39.61	50.21
Solyc04g014260.1.1	Tomato	nucleus	40.26	50.2
KRG90132	Soybean	cytosol	33.12	49.76
KRH69650	Soybean	nucleus	46.1	48.14
KRG90215	Soybean	cytosol	32.79	47.64
KRH45574	Soybean	cytosol	38.96	45.98
Zm00001d052395_P001	Maize	plastid	12.66	45.35
Zm00001d023289_P001	Maize	cytosol	14.29	44.9
Zm00001d023286_P001	Maize	cytosol	14.29	44.9
CDY54719	Canola	nucleus	34.09	43.57
KRH71953	Soybean	nucleus	36.04	43.36
KRG90210	Soybean	nucleus	36.04	43.36
Bra037816.1-P	Field mustard	nucleus	33.77	42.98
KRG90213	Soybean	nucleus	35.39	42.75
KRH71954	Soybean	nucleus	34.09	42.51
KRG90211	Soybean	cytosol	35.39	42.41
CDX81284	Canola	nucleus	35.06	42.35
CDY33960	Canola	nucleus	36.36	41.64
CDY37827	Canola	nucleus	36.69	41.54
Bra031859.1-P	Field mustard	nucleus	36.69	41.54
AT5G65410.1	Thale cress	nucleus	37.34	41.22
CDY14559	Canola	nucleus	37.99	39.93
Bra024382.1-P	Field mustard	nucleus	37.66	39.59
Zm00001d032177_P001	Maize	mitochondrion	14.94	38.66
Zm00001d044662_P001	Maize	cytosol, plastid	12.34	38.0
Zm00001d009674_P001	Maize	nucleus	28.25	36.4
Zm00001d050452_P001	Maize	mitochondrion	14.94	36.22
Zm00001d041780_P001	Maize	nucleus	38.96	34.38
Zm00001d020459_P001	Maize	mitochondrion	11.69	32.43
Zm00001d003645_P001	Maize	nucleus	29.87	30.67
Zm00001d013409_P001	Maize	cytosol, mitochondrion, nucleus	23.38	30.0
Zm00001d033791_P001	Maize	cytosol, mitochondrion, nucleus	22.4	29.87
Zm00001d049000_P001	Maize	plastid	39.61	29.05
Zm00001d032175_P001	Maize	cytosol	29.22	24.13
Zm00001d005757_P001	Maize	nucleus	27.6	23.55
Zm00001d050443_P001	Maize	nucleus	27.92	23.5
Zm00001d020460_P001	Maize	nucleus	27.92	23.24
Zm00001d017784_P001	Maize	nucleus	30.84	22.78
Zm00001d051573_P001	Maize	nucleus	32.14	22.2

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100283050	MapMan:15.5.3.13	UniProt:A0A1D6KLI5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	ProteinID:ONM03752.1
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF25	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002215392	InterPro:ZF_HD_homeobox_Cys/His_dimer	EnsemblPlantsGene:Zm00001d031840	EnsemblPlants:Zm00001d031840_P001
EnsemblPlants:Zm00001d031840_T001	SEG:seg	:	:	:	:

Description

ZF-HD-transcription factor 3ZF-HD protein dimerisation region containing protein

Coordinates

chr1:-:203354978..203355904

Molecular Weight (calculated)

31558.0 Da

IEP (calculated)

7.090

GRAVY (calculated)

-0.454

Length

308 amino acids

Sequence
(BLAST)

001: MDFDEHDDGD EEMTPMPVSS SYDAPMQPGL GLGGGGGETP KHGDSAGAGS FRTPPAGGFG GGGAGAGAGA GGGGATRYRE CLKNHAVGIG GHAVDGCGEF
101: MAAGEEGSID ALRCAACGCH RNFHRKESDN SPAGGGGVAP PDPAAALSPA AITAYGAAVA AHHHQFSPYY RTPAGYFLHQ QLAAAAGHMQ RPLALPSTSH
201: SLGREEGDDV SGLIGPMVVA PMMGMSLGPG GGPSGGSSGG SGSGKKRFRT KFTQEQKDRM LAFAERLGWR IQKHDEAAVQ QFCEEVCVKR HVLKVWMHNN
301: KHTLGKKP

Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.