Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005931_P001 | |
| Zm00001d020774_P001 | |
| Zm00001d031840_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42780.1 | Zm00001d005931_P001 | AT5G65410.1 | 16428600 |
| AT5G42780.1 | Zm00001d020774_P001 | AT5G65410.1 | 16428600 |
| AT5G42780.1 | Zm00001d031840_P001 | AT5G65410.1 | 16428600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93559 | Sorghum | cytosol, mitochondrion, nucleus | 87.92 | 90.17 |
| Zm00001d033791_P001 | Maize | cytosol, mitochondrion, nucleus | 85.83 | 89.18 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 76.25 | 77.54 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 76.25 | 77.54 |
| TraesCSU01G070700.1 | Wheat | cytosol, mitochondrion, nucleus | 75.42 | 76.69 |
| HORVU4Hr1G008360.1 | Barley | cytosol, mitochondrion, nucleus | 75.42 | 75.42 |
| Os03t0718500-00 | Rice | mitochondrion, nucleus, peroxisome | 71.67 | 72.27 |
| KRH60587 | Soybean | nucleus | 29.17 | 46.05 |
| VIT_17s0000g00810.t01 | Wine grape | nucleus | 29.17 | 45.16 |
| KRH41884 | Soybean | nucleus | 27.92 | 44.08 |
| PGSC0003DMT400083993 | Potato | nucleus | 29.17 | 39.11 |
| Solyc03g098060.1.1 | Tomato | nucleus | 29.17 | 39.11 |
| KRH48720 | Soybean | nucleus | 29.17 | 32.11 |
| KRH38989 | Soybean | nucleus, plastid | 30.0 | 31.44 |
| Zm00001d052395_P001 | Maize | plastid | 11.25 | 31.4 |
| Zm00001d009674_P001 | Maize | nucleus | 29.58 | 29.71 |
| Zm00001d023286_P001 | Maize | cytosol | 12.08 | 29.59 |
| Zm00001d023289_P001 | Maize | cytosol | 12.08 | 29.59 |
| Zm00001d044662_P001 | Maize | cytosol, plastid | 11.67 | 28.0 |
| Zm00001d003645_P001 | Maize | nucleus | 34.17 | 27.33 |
| Zm00001d020774_P001 | Maize | nucleus | 28.75 | 25.27 |
| Zm00001d005931_P001 | Maize | nucleus | 27.92 | 23.43 |
| Zm00001d020459_P001 | Maize | mitochondrion | 10.83 | 23.42 |
| Zm00001d031840_P001 | Maize | nucleus | 30.0 | 23.38 |
| AT5G42780.1 | Thale cress | nucleus | 23.33 | 23.14 |
| Zm00001d032177_P001 | Maize | mitochondrion | 10.83 | 21.85 |
| Zm00001d020460_P001 | Maize | nucleus | 32.08 | 20.81 |
| Zm00001d005757_P001 | Maize | nucleus | 31.25 | 20.78 |
| Zm00001d041780_P001 | Maize | nucleus | 29.58 | 20.34 |
| Zm00001d032175_P001 | Maize | cytosol | 31.25 | 20.11 |
| Zm00001d050452_P001 | Maize | mitochondrion | 10.42 | 19.68 |
| Bra027455.1-P | Field mustard | nucleus | 23.33 | 19.51 |
| Zm00001d050443_P001 | Maize | nucleus | 29.17 | 19.13 |
| Zm00001d049000_P001 | Maize | plastid | 32.92 | 18.81 |
| Zm00001d017784_P001 | Maize | nucleus | 27.5 | 15.83 |
| Zm00001d051573_P001 | Maize | nucleus | 29.17 | 15.7 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | UniProt:A0A1D6GJ08 | ProteinID:AQK63398.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 |
| PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF16 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 |
| TIGRFAMs:TIGR01566 | UniParc:UPI000221DAFA | InterPro:ZF_HD_homeobox_Cys/His_dimer | EnsemblPlantsGene:Zm00001d013409 | EnsemblPlants:Zm00001d013409_P001 | EnsemblPlants:Zm00001d013409_T001 |
| SEG:seg | : | : | : | : | : |
Description
ZF-HD-transcription factor 4ZF-HD protein dimerisation region containing protein
Coordinates
chr5:-:10540717..10541439
Molecular Weight (calculated)
24977.3 Da
IEP (calculated)
7.551
GRAVY (calculated)
-0.629
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQQQHQERP WEVYRECMRN HAAKLGTYAS DGCCEYTPDD GQPAAMLCAA CGCHRNFHRK AFLADAAAGA HGGAHGAMLP SPGASPGYGM HHMAIAAAGM
101: GGDAGAHGSG SGGRRRTRTK FTDEQKERMA RLAERLGWRM PKREPGRALG DDEVGRFCRE IGVTRQVFKV WMHNHKSGGG GSQGEGASAG AAGAAQTTSS
201: STTRGGGGGG VVGGGGSMST AMMGADVEDD EEVRGSEMCM
101: GGDAGAHGSG SGGRRRTRTK FTDEQKERMA RLAERLGWRM PKREPGRALG DDEVGRFCRE IGVTRQVFKV WMHNHKSGGG GSQGEGASAG AAGAAQTTSS
201: STTRGGGGGG VVGGGGSMST AMMGADVEDD EEVRGSEMCM
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLDGYQ VFKRYEATSA H
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLDGYQ VFKRYEATSA H
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.